Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 7.5e-215 750.4 408 100.0
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 4.5e-119 432.2 408 63.2
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 7.9e-116 421.4 415 61.9
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 1.8e-115 420.2 410 59.5
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 3.9e-115 419.1 413 64.2
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 1.3e-113 414.1 416 64.2
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.3e-113 414.1 411 58.6
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.4e-112 409.8 410 60.7
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.4e-112 409.8 420 61.0
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.3e-112 408.7 422 60.2
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 5.3e-112 408.7 423 64.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 2.9e-110 402.9 419 62.1
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.8e-107 393.7 431 57.5
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 7.4e-106 388.3 418 59.8
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 7.7e-103 378.3 423 59.6
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 3.6e-100 369.4 412 53.6
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 1.5e-98 364.0 419 58.2
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 1.5e-98 364.0 383 58.0
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 7.5e-98 361.7 381 63.3
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 7.5e-98 361.7 425 62.1
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 6.3e-97 358.6 447 57.0
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 5.3e-96 355.5 434 54.1
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 3.5e-95 352.8 420 55.0
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 4.5e-95 352.4 423 58.4
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.0e-94 351.3 400 52.8
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 2.9e-94 349.7 433 59.4
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 9.4e-93 344.7 435 55.4
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 3.0e-91 339.7 431 55.2
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 4.0e-91 339.3 410 52.7
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 5.2e-91 339.0 432 55.6
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 2.0e-90 337.0 418 56.2
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.7e-89 332.8 434 53.7
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 4.1e-88 329.3 414 50.0
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 9.1e-88 328.2 401 53.1
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.7e-87 325.1 432 54.4
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.7e-87 325.1 432 54.4
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 6.6e-86 322.0 410 49.8
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 3.3e-85 319.7 416 53.8
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.5e-82 310.8 420 49.8
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.0e-82 310.5 420 49.8
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 2.6e-82 310.1 419 56.3
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 9.8e-82 308.1 401 50.4
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.4e-80 304.3 416 51.0
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.4e-80 304.3 398 52.5
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.4e-80 303.5 419 50.4
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 2.4e-80 303.5 417 51.6
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.4e-80 303.5 400 49.5
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 1.6e-79 300.8 411 51.1
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.9e-79 298.9 419 49.4
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 8.6e-78 295.0 415 52.0
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 1.7e-73 280.8 459 49.0
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.4e-72 277.7 322 54.0
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 2.3e-70 270.4 400 51.0
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.1e-69 268.1 397 50.9
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 5.6e-69 265.8 401 43.9
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 9.5e-69 265.0 461 45.3
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 3.6e-68 263.1 380 50.8
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 1.4e-67 261.2 311 51.8
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 2.2e-65 253.8 418 44.0
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 6.0e-63 245.7 424 41.5
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 7.8e-63 245.4 410 48.3
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 3.9e-62 243.0 422 45.7
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 6.6e-62 242.3 301 49.8
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.5e-61 241.1 361 48.2
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 1.9e-61 240.7 397 50.6
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 2.5e-61 240.4 455 41.3
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 3.3e-61 240.0 390 49.0
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 5.6e-61 239.2 366 45.6
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 8.9e-59 231.9 435 42.1
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 5.8e-58 229.2 412 45.1
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 3.2e-56 223.4 459 40.5
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.7e-54 217.6 396 44.7
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 1.9e-53 214.2 430 45.1
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.4e-51 207.2 408 39.2
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 6.8e-51 205.7 377 41.4
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 6.8e-51 205.7 409 38.9
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.5e-50 204.5 168 63.1
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 4.4e-50 203.0 229 52.4
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 3.8e-49 199.9 370 46.5
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.2e-47 194.9 412 38.6
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 7.8e-47 192.2 394 38.8
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.5e-45 188.0 420 37.4
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.3e-44 184.9 365 47.4
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 3.6e-44 183.3 410 39.8
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 6.2e-44 182.6 430 35.1
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.9e-41 173.7 403 36.5
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 4.2e-40 169.9 114 70.2
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 1.6e-39 167.9 453 38.2
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 9.6e-37 158.7 423 36.6
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.8e-36 157.1 410 33.9
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 1.8e-35 154.5 413 34.6
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 3.1e-35 153.7 400 32.8
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.6e-34 150.6 430 33.7
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 2.9e-33 147.1 348 33.9
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 6.4e-33 146.0 296 39.9
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 8.4e-33 145.6 386 36.8
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.1e-32 145.2 348 34.8
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.3e-30 137.5 351 34.8
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.1e-28 131.0 176 47.7
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.4e-27 128.3 122 68.0
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 5.8e-26 122.9 123 65.0
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-25 121.7 351 34.2
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 1.3e-25 121.7 351 34.2
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 4.9e-25 119.8 430 31.6
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.4e-24 118.2 338 33.4
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.9e-24 117.9 367 30.5
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 7.1e-24 115.9 344 34.0
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.6e-23 114.8 355 33.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 2.1e-23 114.4 329 31.9
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.7e-23 114.0 297 33.7
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.6e-23 113.2 336 33.3
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 6.0e-23 112.8 423 31.0
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 6.0e-23 112.8 423 31.0
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 7.9e-23 112.5 355 32.7
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 2.3e-22 110.9 338 32.8
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 3.9e-22 110.2 338 32.8
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 3.9e-22 110.2 338 32.8
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 3.9e-22 110.2 110 50.9
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 5.1e-22 109.8 354 32.2
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.9e-21 107.8 357 31.9
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.9e-21 107.8 357 31.9
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 5.7e-21 106.3 409 30.1
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 2.8e-20 104.0 335 31.3
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 4.8e-20 103.2 341 32.6
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 8.2e-20 102.4 405 27.9
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.1e-19 102.1 415 31.3
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 1.4e-19 101.7 423 31.2
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 1.8e-19 101.3 334 34.1
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 7.6e-18 95.9 414 28.3
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 1.7e-17 94.7 331 32.6
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 5.0e-17 93.2 330 30.0
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 1.9e-16 91.3 326 31.9
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.2e-16 90.5 355 31.3
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 1.2e-15 88.6 411 30.9
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.2e-15 88.6 112 51.8
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.1e-15 87.8 363 30.6
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.7e-15 87.4 315 30.8
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 6.7e-14 82.8 201 35.8
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 1.9e-13 81.3 387 28.4
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 3.3e-13 80.5 415 27.0
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.3e-13 80.5 187 36.9
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 7.4e-13 79.3 302 29.5
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 1.6e-12 78.2 390 27.4
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 8.2e-12 75.9 47 87.2
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.4e-11 74.3 349 30.4
unitig_0.g2816 Utricularia gibba HOM05D005213 ORTHO05D006229 2.7e-07 60.8 383 26.6
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 7.9e-07 59.3 72 41.7
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 6.7e-06 56.2 323 27.6


User provided reference genes

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