Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.4e-100 369.8 210 100.0
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 7.1e-52 208.0 211 60.7
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 6.6e-50 201.4 212 59.9
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 9.6e-49 197.6 196 60.7
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 2.8e-48 196.1 197 61.9
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 6.2e-48 194.9 211 57.3
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 1.8e-47 193.4 203 60.6
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 1.5e-46 190.3 226 56.2
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 4.5e-46 188.7 201 59.2
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 5.8e-46 188.3 196 61.7
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 5.8e-46 188.3 197 56.9
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 5.8e-46 188.3 199 58.3
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 7.6e-46 188.0 215 55.3
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 9.9e-46 187.6 199 59.8
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 9.9e-46 187.6 201 60.2
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 2.9e-45 186.0 224 54.0
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 8.4e-45 184.5 220 55.0
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 1.9e-44 183.3 201 56.7
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 1.9e-44 183.3 228 51.3
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 5.4e-44 181.8 212 54.7
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 5.4e-44 181.8 200 58.0
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.6e-43 180.3 211 57.3
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.6e-43 180.3 197 56.9
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 2.7e-43 179.5 196 57.7
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 4.6e-43 178.7 203 56.2
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 4.6e-43 178.7 201 56.7
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 1.8e-42 176.8 195 57.4
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 1.8e-42 176.8 210 54.8
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 1.8e-42 176.8 210 56.2
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 3.9e-42 175.6 201 54.7
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 3.9e-42 175.6 197 55.3
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 6.7e-42 174.9 206 52.9
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.5e-41 173.7 210 56.2
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.5e-41 173.7 210 56.2
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-41 173.7 203 54.7
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-41 173.7 208 53.4
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.9e-41 173.3 203 55.7
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.9e-41 173.3 195 55.4
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 2.5e-41 172.9 203 54.7
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 3.3e-41 172.6 195 53.3
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 7.4e-41 171.4 197 56.3
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.3e-40 170.6 213 50.7
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 2.1e-40 169.9 196 55.1
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 2.1e-40 169.9 212 52.8
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.8e-40 169.5 214 51.9
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 2.8e-40 169.5 199 57.3
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 4.8e-40 168.7 199 56.8
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 6.2e-40 168.3 218 49.1
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 6.2e-40 168.3 215 53.0
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 8.1e-40 167.9 210 51.4
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 1.4e-39 167.2 212 55.2
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 2.4e-39 166.4 196 57.7
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 5.3e-39 165.2 196 56.6
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 6.9e-39 164.9 199 52.3
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 6.9e-39 164.9 197 51.8
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.2e-38 164.1 196 52.6
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 1.5e-38 163.7 210 48.6
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 2.0e-38 163.3 195 55.4
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 4.5e-38 162.2 195 52.8
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.0e-37 161.0 196 55.6
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.3e-37 160.6 200 52.5
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.3e-37 160.6 196 49.0
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 1.3e-37 160.6 214 52.3
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 8.4e-37 157.9 196 54.6
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 8.4e-37 157.9 212 50.0
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.1e-36 157.5 194 54.1
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 1.1e-36 157.5 196 50.0
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 1.1e-36 157.5 194 50.0
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 1.9e-36 156.8 203 47.3
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 2.5e-36 156.4 203 47.3
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 5.5e-36 155.2 194 49.5
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 5.5e-36 155.2 194 49.5
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 9.3e-36 154.5 211 54.0
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 9.3e-36 154.5 197 48.2
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 1.2e-35 154.1 196 49.5
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.2e-35 154.1 196 49.5
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 1.2e-35 154.1 224 46.9
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 2.1e-35 153.3 196 51.5
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 2.7e-35 152.9 214 47.2
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 2.7e-35 152.9 201 49.8
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 4.6e-35 152.1 211 53.1
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 1.3e-34 150.6 195 49.7
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.8e-34 150.2 195 51.8
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 3.9e-34 149.1 194 49.0
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 8.7e-34 147.9 195 49.2
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 8.7e-34 147.9 263 42.6
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 8.7e-34 147.9 233 44.6
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.5e-33 147.1 208 47.6
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.3e-33 146.0 201 47.8
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 4.3e-33 145.6 197 49.7
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 5.7e-33 145.2 209 51.2
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 7.4e-33 144.8 194 47.9
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 7.4e-33 144.8 211 46.9
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.6e-32 143.7 194 45.9
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 2.8e-32 142.9 196 50.0
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 6.2e-32 141.7 194 49.5
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 8.2e-32 141.4 169 53.3
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.1e-31 141.0 194 47.4
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 1.4e-31 140.6 195 49.2
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 2.6e-30 136.3 213 48.4
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 1.3e-29 134.0 189 47.6
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.9e-29 132.9 210 43.8
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.9e-28 130.2 220 46.8
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 7.1e-28 128.3 194 44.8
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.2e-27 127.5 201 41.8
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.2e-27 127.5 189 46.6
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.2e-27 127.5 189 46.6
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 3.5e-27 125.9 163 52.8
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 4.6e-27 125.6 204 44.1
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 1.8e-26 123.6 168 47.6
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.9e-25 120.2 194 43.3
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 2.5e-25 119.8 254 40.6
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 4.3e-25 119.0 254 40.6
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.7e-25 118.6 148 52.7
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.8e-23 113.6 191 41.4
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 4.5e-22 109.0 205 42.4
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.7e-21 107.1 175 45.1
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 5.0e-21 105.5 178 39.9
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 1.4e-20 104.0 191 38.7
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 1.9e-20 103.6 154 48.1
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 2.3e-18 96.7 114 50.0
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 7.4e-17 91.7 194 34.5
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 1.3e-16 90.9 206 32.0
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.7e-16 90.5 144 47.9
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 4.8e-16 89.0 145 45.5
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.1e-15 85.9 199 38.7
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 5.0e-13 79.0 172 43.6
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 5.0e-13 79.0 186 30.6
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.2e-12 76.3 59 66.1
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 1.6e-11 73.9 202 29.7
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 6.3e-08 62.0 128 42.2
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.4e-07 60.8 136 35.3
CDE10G0174 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 4.1e-07 59.3 72 52.8


User provided reference genes

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