Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07350 Coffea canephora HOM05D000738 ORTHO05D011926 6.7e-15 82.8 41 100.0
Cc06_g16510 Coffea canephora HOM05D000738 ORTHO05D000675 4.4e-14 80.1 40 97.5
HanXRQChr13g0390641 Helianthus annuus HOM05D000738 ORTHO05D000675 1.2e-11 72.0 40 82.5
Ciclev10004527m.g Citrus clementina HOM05D000738 ORTHO05D000675 2.0e-11 71.2 40 82.5
QL07p021913 Quercus lobata HOM05D000738 ORTHO05D000675 2.0e-11 71.2 40 82.5
Dinv18092 Davidia involucrata HOM05D000738 ORTHO05D000675 2.6e-11 70.9 40 82.5
Duzib106G1391 Durio zibethinus HOM05D000738 ORTHO05D000675 2.6e-11 70.9 40 77.5
Lsat_1_v5_gn_5_163821 Lactuca sativa HOM05D000738 ORTHO05D000675 2.6e-11 70.9 40 80.0
Dinv24118 Davidia involucrata HOM05D000738 ORTHO05D000675 5.9e-11 69.7 40 80.0
COL.COLO4_28710 Corchorus olitorius HOM05D000738 ORTHO05D000675 1.3e-10 68.6 40 75.0
Duzib093G0290 Durio zibethinus HOM05D000738 ORTHO05D000675 1.3e-10 68.6 40 75.0
ECA248G3361 Erigeron canadensis HOM05D000738 ORTHO05D000675 1.3e-10 68.6 40 77.5
Actinidia09363 Actinidia chinensis HOM05D000738 ORTHO05D000675 2.9e-10 67.4 40 77.5
Haze_19918 Corylus avellana HOM05D000738 ORTHO05D000675 2.9e-10 67.4 40 77.5
Atru.chr1.971 Acer truncatum HOM05D000738 ORTHO05D000675 3.8e-10 67.0 40 75.0
Atru.chr1.999 Acer truncatum HOM05D000738 ORTHO05D000675 3.8e-10 67.0 40 75.0
CiPaw.10G030500 Carya illinoinensis HOM05D000738 ORTHO05D000675 5.0e-10 66.6 40 80.0
Hma1.2p1_1995F.1_g310330 Hydrangea macrophylla HOM05D000738 ORTHO05D000675 6.5e-10 66.2 40 77.5
CSS0039295 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 8.5e-10 65.9 40 75.0
Lj7C597T25 Lonicera japonica HOM05D000738 ORTHO05D000675 8.5e-10 65.9 40 77.5
Eucgr.A02404 Eucalyptus grandis HOM05D000738 ORTHO05D000675 1.1e-09 65.5 40 75.0
CANSAT80G0761 Cannabis sativa HOM05D000738 ORTHO05D000675 2.5e-09 64.3 40 75.0
Gohir.D01G186000 Gossypium hirsutum HOM05D000738 ORTHO05D000675 2.5e-09 64.3 40 72.5
Gorai.002G229400 Gossypium raimondii HOM05D000738 ORTHO05D000675 2.5e-09 64.3 40 72.5
Actinidia20287 Actinidia chinensis HOM05D000738 ORTHO05D000675 3.2e-09 63.9 40 72.5
MSTRG.6455 Avicennia marina HOM05D000738 ORTHO05D000675 3.2e-09 63.9 40 75.0
Cfa016872 Carpinus fangiana HOM05D000738 ORTHO05D000675 3.2e-09 63.9 40 72.5
Manes.09G029900 Manihot esculenta HOM05D000738 ORTHO05D000675 3.2e-09 63.9 40 70.0
Cpa.g.sc92.3 Carica papaya HOM05D000738 ORTHO05D011926 5.5e-09 63.2 42 73.8
TWI77G0208 Tripterygium wilfordii HOM05D000738 ORTHO05D000675 5.5e-09 63.2 40 72.5
TAR369G0947 Trochodendron aralioides HOM05D000738 ORTHO05D000675 5.5e-09 63.2 40 72.5
ClCG04G000580 Citrullus lanatus HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 70.0
MELO3C009063.2 Cucumis melo HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 70.0
CsaV3_4G031440 Cucumis sativus L. HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 70.0
Glyma.19G143000 Glycine max HOM05D000738 ORTHO05D000675 7.2e-09 62.8 41 75.6
Gohir.D09G121500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 72.5
Gorai.006G139000 Gossypium raimondii HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 72.5
Phvul.001G137000 Phaseolus vulgaris HOM05D000738 ORTHO05D000675 7.2e-09 62.8 41 75.6
Prupe.7G068700 Prunus persica HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 70.0
Sc19g0006830 Simmondsia chinensis HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 72.5
Sc19g0006840 Simmondsia chinensis HOM05D000738 ORTHO05D011926 7.2e-09 62.8 40 72.5
Sc19g0006850 Simmondsia chinensis HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 72.5
vmacro07871 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 7.2e-09 62.8 40 70.0
VMungo1383G1315 Vigna mungo HOM05D000738 ORTHO05D000675 7.2e-09 62.8 41 75.6
DCAR_013574 Daucus carota HOM05D000738 ORTHO05D000675 9.4e-09 62.4 41 70.7
AUR62024385 Chenopodium quinoa HOM05D000738 ORTHO05D000675 1.2e-08 62.0 40 70.0
AUR62025969 Chenopodium quinoa HOM05D000738 ORTHO05D000675 1.2e-08 62.0 40 70.0
PGR004G0104 Punica granatum HOM05D000738 ORTHO05D000675 1.6e-08 61.6 40 67.5
FvH4_6g23080 Fragaria vesca HOM05D000738 ORTHO05D000675 2.1e-08 61.2 40 70.0
FAN05G4282 Fragaria x ananassa HOM05D000738 ORTHO05D000675 2.1e-08 61.2 40 70.0
FAN09G1318 Fragaria x ananassa HOM05D000738 ORTHO05D000675 2.1e-08 61.2 40 70.0
FAN14G5456 Fragaria x ananassa HOM05D000738 ORTHO05D000675 2.1e-08 61.2 40 70.0
Potri.016G051900 Populus trichocarpa HOM05D000738 ORTHO05D000675 3.6e-08 60.5 40 67.5
Rhsim13G0223900 Rhododendron simsii HOM05D000738 ORTHO05D000675 3.6e-08 60.5 40 70.0
RcHm_v2.0_Chr3g0480931 Rosa chinensis HOM05D000738 ORTHO05D000675 3.6e-08 60.5 40 67.5
vmacro04185 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 3.6e-08 60.5 40 70.0
MSTRG.10827 Avicennia marina HOM05D000738 ORTHO05D000675 4.7e-08 60.1 40 65.0
MSTRG.26105 Avicennia marina HOM05D000738 ORTHO05D000675 4.7e-08 60.1 40 67.5
Migut.K00067 Erythranthe guttata HOM05D000738 ORTHO05D000675 6.1e-08 59.7 40 70.0
Dinv08034 Davidia involucrata HOM05D000738 ORTHO05D000675 8.0e-08 59.3 40 67.5
Glyma.03G140100 Glycine max HOM05D000738 ORTHO05D000675 8.0e-08 59.3 41 70.7
Sed0013343 Sechium edule HOM05D000738 ORTHO05D000675 8.0e-08 59.3 40 67.5
Lj1g0022537 Lotus japonicus HOM05D000738 ORTHO05D000675 1.0e-07 58.9 41 70.7
Sed0010581 Sechium edule HOM05D000738 ORTHO05D000675 1.0e-07 58.9 40 65.0
Ca_08486_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 1.4e-07 58.5 41 70.7
SalBow1G8417 Salvia bowleyana HOM05D000738 ORTHO05D000675 1.4e-07 58.5 38 68.4
Actinidia06887 Actinidia chinensis HOM05D000738 ORTHO05D000675 1.8e-07 58.2 40 65.0
Nn7g36177 Nelumbo nucifera HOM05D000738 ORTHO05D000675 1.8e-07 58.2 40 65.0
unitig_736.g22291 Utricularia gibba HOM05D000738 ORTHO05D000675 1.8e-07 58.2 40 62.5
GSVIVG01033338001 Vitis vinifera HOM05D000738 ORTHO05D000675 1.8e-07 58.2 40 67.5
EL10Ac3g06992 Beta vulgaris HOM05D000738 ORTHO05D000675 2.3e-07 57.8 40 62.5
Cc01_g04480 Coffea canephora HOM05D000738 ORTHO05D000675 2.3e-07 57.8 40 67.5
Migut.J01790 Erythranthe guttata HOM05D000738 ORTHO05D000675 2.3e-07 57.8 39 66.7
Rhsim03G0011700 Rhododendron simsii HOM05D000738 ORTHO05D000675 2.3e-07 57.8 40 65.0
Potri.006G056300 Populus trichocarpa HOM05D000738 ORTHO05D000675 3.0e-07 57.4 40 65.0
Sabra06G0039800 Salix brachista HOM05D000738 ORTHO05D004372 3.0e-07 57.4 40 65.0
Gohir.D08G023500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 4.0e-07 57.0 40 65.0
Gorai.004G018800 Gossypium raimondii HOM05D000738 ORTHO05D000675 4.0e-07 57.0 40 65.0
Psat3g071040 Pisum sativum HOM05D000738 ORTHO05D000675 4.0e-07 57.0 41 68.3
COL.COLO4_24847 Corchorus olitorius HOM05D000738 ORTHO05D000675 5.2e-07 56.6 40 65.0
Oeu008123.1 Olea europaea HOM05D000738 ORTHO05D000675 5.2e-07 56.6 40 65.0
TAR623G1326 Trochodendron aralioides HOM05D000738 ORTHO05D000675 5.2e-07 56.6 40 67.5
TAR623G1363 Trochodendron aralioides HOM05D000738 ORTHO05D000675 5.2e-07 56.6 40 67.5
Aqoxy1G00216 Aquilegia oxysepala HOM05D000738 ORTHO05D000675 6.7e-07 56.2 40 67.5
Hund19170 Selenicereus undatus HOM05D000738 ORTHO05D000675 6.7e-07 56.2 41 63.4
Hund24748 Selenicereus undatus HOM05D000738 ORTHO05D000675 6.7e-07 56.2 41 63.4
Nitab4.5_0000452g0100 Nicotiana tabacum HOM05D000738 ORTHO05D000675 8.8e-07 55.8 40 67.5
Nitab4.5_0003074g0020 Nicotiana tabacum HOM05D000738 ORTHO05D000675 8.8e-07 55.8 40 67.5
Potri.001G018700 Populus trichocarpa HOM05D000738 ORTHO05D000675 8.8e-07 55.8 40 62.5
Sabra16G0055500 Salix brachista HOM05D000738 ORTHO05D004372 8.8e-07 55.8 40 65.0
Gohir.A08G013100 Gossypium hirsutum HOM05D000738 ORTHO05D000675 1.1e-06 55.5 40 62.5
Medtr7g092360 Medicago truncatula HOM05D000738 ORTHO05D000675 1.1e-06 55.5 41 70.7
CiPaw.09G034300 Carya illinoinensis HOM05D000738 ORTHO05D000675 1.5e-06 55.1 41 65.9
Ciclev10015011m.g Citrus clementina HOM05D000738 ORTHO05D000675 1.5e-06 55.1 40 65.0
Eucgr.B03821 Eucalyptus grandis HOM05D000738 ORTHO05D000675 1.5e-06 55.1 32 75.0
TPR.G3887 Trifolium pratense HOM05D000738 ORTHO05D000675 1.5e-06 55.1 41 65.9
AagrBONN_evm.TU.Sc2ySwM_362.1912 Anthoceros agrestis HOM05D000738 ORTHO05D000675 2.0e-06 54.7 32 75.0
Duzib168G2329 Durio zibethinus HOM05D000738 ORTHO05D000675 2.0e-06 54.7 31 77.4
MD14G1065800 Malus domestica HOM05D000738 ORTHO05D000675 2.6e-06 54.3 29 82.8
Manes.08G047800 Manihot esculenta HOM05D000738 ORTHO05D000675 2.6e-06 54.3 40 60.0
QL01p005282 Quercus lobata HOM05D000738 ORTHO05D000675 2.6e-06 54.3 40 62.5
SGA_v2.0_scaffold637G53305 Striga asiatica HOM05D000738 ORTHO05D000675 2.6e-06 54.3 32 68.8
SGA_v2.0_scaffold94G28450 Striga asiatica HOM05D000738 ORTHO05D000675 2.6e-06 54.3 40 62.5
THA.LOC104817900 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 2.6e-06 54.3 40 57.5
ATR0605G360 Amborella trichopoda HOM05D000738 ORTHO05D000675 3.3e-06 53.9 32 75.0
Cfa009736 Carpinus fangiana HOM05D000738 ORTHO05D000675 3.3e-06 53.9 40 60.0
Hund18978 Selenicereus undatus HOM05D000738 ORTHO05D011926 3.3e-06 53.9 32 71.9
Sc12g0004860 Simmondsia chinensis HOM05D000738 ORTHO05D000675 3.3e-06 53.9 32 71.9
HPP92_027463 Vanilla planifolia HOM05D000738 ORTHO05D000675 3.3e-06 53.9 32 71.9
Actinidia07273 Actinidia chinensis HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
Ah.06g193650 Amaranthus hybridus HOM05D000738 ORTHO05D000675 4.4e-06 53.5 31 71.0
Ah.15g100070 Amaranthus hybridus HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
arahy.Tifrunner.gnm1.ann1.3QQJ98 Arachis hypogaea HOM05D000738 ORTHO05D000675 4.4e-06 53.5 42 61.9
arahy.Tifrunner.gnm1.ann1.TH8WCF Arachis hypogaea HOM05D000738 ORTHO05D000675 4.4e-06 53.5 42 61.9
CSS0024287 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
CSS0046029 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
DCAR_017001 Daucus carota HOM05D000738 ORTHO05D000675 4.4e-06 53.5 41 63.4
Dinv17091 Davidia involucrata HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
HanXRQChr01g0008431 Helianthus annuus HOM05D000738 ORTHO05D000675 4.4e-06 53.5 29 82.8
MBI17_g00901_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
Oeu043300.3 Olea europaea HOM05D000738 ORTHO05D000675 4.4e-06 53.5 40 65.0
Os05g0440800 Oryza sativa ssp. japonica HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
Sabra01G0013300 Salix brachista HOM05D000738 ORTHO05D000675 4.4e-06 53.5 40 60.0
Hund20943 Selenicereus undatus HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
TAR636G3338 Trochodendron aralioides HOM05D000738 ORTHO05D000675 4.4e-06 53.5 32 71.9
GSVIVG01025304001 Vitis vinifera HOM05D000738 ORTHO05D000675 4.4e-06 53.5 29 82.8
Lalb_Chr25g0287481 Lupinus albus HOM05D000738 ORTHO05D000675 5.7e-06 53.1 43 62.8
Pp3c2_28480 Physcomitrium patens HOM05D000738 ORTHO05D000675 5.7e-06 53.1 33 66.7
Solyc11g061960.2 Solanum lycopersicum HOM05D000738 ORTHO05D000675 5.7e-06 53.1 30 80.0
Sopen11g023760 Solanum pennellii HOM05D000738 ORTHO05D000675 5.7e-06 53.1 30 80.0
Aqoxy1G00674 Aquilegia oxysepala HOM05D000738 ORTHO05D000675 7.5e-06 52.8 32 71.9
arahy.Tifrunner.gnm1.ann1.BFQ1HQ Arachis hypogaea HOM05D000738 ORTHO05D000675 7.5e-06 52.8 31 77.4
PGR102G1828 Punica granatum HOM05D000738 ORTHO05D000675 7.5e-06 52.8 32 71.9
PGSC0003DMG400033929 Solanum tuberosum HOM05D000738 ORTHO05D000675 7.5e-06 52.8 40 55.0
Atru.chr3.3132 Acer truncatum HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
Aa31LG4G13730 Aethionema arabicum HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
CANSAT54G3039 Cannabis sativa HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
Cpa.g.sc754.4 Carica papaya HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
Ca_19464_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
Haze_23089 Corylus avellana HOM05D000738 ORTHO05D025196 9.7e-06 52.4 40 57.5
Dinv08140 Davidia involucrata HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 68.8
Migut.N02459 Erythranthe guttata HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 68.8
Thhalv10010103m.g Eutrema salsugineum HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
Glyma.11G179600 Glycine max HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
Glyma.12G093800 Glycine max HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
Lalb_Chr01g0004991 Lupinus albus HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
MD12G1065800 Malus domestica HOM05D000738 ORTHO05D000675 9.7e-06 52.4 29 79.3
Manes.06G166700 Manihot esculenta HOM05D000738 ORTHO05D000675 9.7e-06 52.4 40 57.5
Nn2g14289 Nelumbo nucifera HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 68.8
Nitab4.5_0008868g0030 Nicotiana tabacum HOM05D000738 ORTHO05D000675 9.7e-06 52.4 31 74.2
Oeu031458.2 Olea europaea HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 68.8
Oeu048841.1 Olea europaea HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 68.8
PSO384G1117 Papaver somniferum HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
QL01p011193 Quercus lobata HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
RcHm_v2.0_Chr7g0178391 Rosa chinensis HOM05D000738 ORTHO05D011926 9.7e-06 52.4 32 71.9
SEGI_22905 Sequoiadendron giganteum HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
SGA_v2.0_scaffold295G47488 Striga asiatica HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 68.8
THA.LOC104799564 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9
TWI60G1577 Tripterygium wilfordii HOM05D000738 ORTHO05D000675 9.7e-06 52.4 31 71.0
unitig_699.g19455 Utricularia gibba HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 68.8
VMungo1127G0334 Vigna mungo HOM05D000738 ORTHO05D000675 9.7e-06 52.4 32 71.9


User provided reference genes

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