Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 2.3e-137 492.3 261 100.0
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.0e-59 233.4 227 57.7
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 3.7e-58 229.2 241 55.2
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 4.5e-56 222.2 227 55.5
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 3.8e-55 219.2 225 55.1
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 8.5e-55 218.0 210 57.6
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 1.1e-54 217.6 202 59.4
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 1.9e-54 216.9 229 58.1
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 2.1e-53 213.4 228 58.3
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 4.7e-53 212.2 219 58.4
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 1.0e-52 211.1 249 56.2
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 8.8e-52 208.0 245 53.1
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.0e-51 206.8 228 56.6
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 2.2e-50 203.4 243 53.9
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 6.3e-50 201.8 242 54.5
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 1.4e-49 200.7 179 64.8
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 2.4e-49 199.9 219 56.6
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 9.1e-49 198.0 202 57.4
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 9.1e-49 198.0 228 53.9
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.2e-48 197.6 198 60.1
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.0e-48 196.8 259 51.7
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 3.5e-48 196.1 198 56.6
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 2.2e-47 193.4 200 59.5
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 2.2e-47 193.4 223 55.2
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 3.8e-47 192.6 243 53.9
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 1.1e-46 191.0 178 61.2
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 1.5e-46 190.7 198 54.5
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 5.5e-46 188.7 234 51.7
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 1.2e-45 187.6 234 53.4
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 1.2e-45 187.6 243 50.6
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 1.8e-44 183.7 179 62.0
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 3.0e-44 183.0 241 49.8
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 4.0e-44 182.6 198 57.1
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 5.2e-44 182.2 244 50.0
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 2.0e-43 180.3 208 53.8
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 2.6e-43 179.9 245 49.4
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 3.4e-43 179.5 205 54.1
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 4.4e-43 179.1 201 52.2
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 4.4e-43 179.1 202 54.5
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 3.7e-42 176.0 228 49.6
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.8e-41 173.7 228 49.1
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 2.4e-41 173.3 251 47.0
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 2.4e-41 173.3 128 71.9
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 3.1e-41 172.9 200 54.0
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 3.1e-41 172.9 220 49.1
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 3.1e-41 172.9 147 63.9
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 5.4e-41 172.2 208 52.4
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 5.4e-41 172.2 228 48.7
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 1.6e-40 170.6 209 51.2
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 1.6e-40 170.6 199 52.8
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 2.0e-40 170.2 199 52.8
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 2.7e-40 169.9 220 49.1
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 5.9e-40 168.7 203 52.7
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 5.9e-40 168.7 209 53.6
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.0e-39 167.9 212 53.8
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 1.7e-39 167.2 200 49.5
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 2.3e-39 166.8 129 68.2
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 3.8e-39 166.0 128 68.8
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 8.6e-39 164.9 253 47.0
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 8.6e-39 164.9 212 54.2
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 3.3e-38 162.9 208 52.4
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 5.6e-38 162.2 105 78.1
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 5.6e-38 162.2 105 78.1
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 5.6e-38 162.2 222 48.2
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.2e-37 161.0 149 62.4
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.6e-37 160.6 114 72.8
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.6e-37 160.6 114 72.8
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.6e-37 160.6 114 72.8
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.6e-37 160.6 114 72.8
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.1e-37 160.2 201 51.7
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 2.8e-37 159.8 200 52.5
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 4.7e-37 159.1 145 60.7
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 4.7e-37 159.1 231 46.3
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 6.1e-37 158.7 134 62.7
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 6.1e-37 158.7 134 62.7
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 6.1e-37 158.7 152 59.2
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 8.0e-37 158.3 149 59.1
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 8.0e-37 158.3 134 62.7
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 8.0e-37 158.3 201 50.7
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 8.0e-37 158.3 201 50.7
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 8.0e-37 158.3 201 50.7
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 8.0e-37 158.3 123 69.9
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 8.0e-37 158.3 170 54.1
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 1.8e-36 157.1 146 60.3
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 2.3e-36 156.8 140 61.4
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.0e-36 156.4 199 50.3
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 4.0e-36 156.0 164 55.5
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 7.5e-35 151.8 241 44.8
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 1.3e-34 151.0 203 52.2
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.3e-34 151.0 243 45.7
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 2.2e-34 150.2 179 52.0
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 2.9e-34 149.8 183 51.9
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 8.3e-34 148.3 164 53.0
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 1.4e-33 147.5 150 58.7
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 1.8e-33 147.1 201 48.8
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 4.1e-33 146.0 220 47.7
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 5.4e-33 145.6 130 62.3
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 7.0e-33 145.2 129 61.2
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 1.3e-31 141.0 176 53.4
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 3.0e-31 139.8 203 45.3
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 5.0e-31 139.0 215 46.5
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 8.6e-31 138.3 161 52.2
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 2.8e-29 133.3 135 57.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.6e-27 126.7 160 50.0
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 6.6e-23 112.1 83 66.3
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 8.9e-20 101.7 274 35.8
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 8.9e-20 101.7 210 38.1
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 6.4e-18 95.5 102 51.0
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 7.8e-08 62.0 116 38.8
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 1.0e-07 61.6 144 41.7
Mapoly0147s0009 Marchantia polymorpha HOM05D007292 ORTHO05D009084 2.5e-06 57.0 86 40.7


User provided reference genes

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