Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 8.2e-147 525.8 824 100.0
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.7e-67 262.3 216 64.8
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 6.9e-61 240.4 216 59.3
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.3e-59 236.1 216 59.3
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.2e-59 235.3 225 60.9
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 3.8e-59 234.6 216 56.5
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.9e-58 232.3 204 61.8
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 4.2e-58 231.1 216 58.3
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.6e-57 229.2 217 57.1
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 4.6e-57 227.6 216 54.6
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.1e-55 223.0 218 56.0
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-55 223.0 216 56.0
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.9e-55 222.2 216 53.2
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.9e-55 222.2 216 54.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 2.5e-55 221.9 206 58.7
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 9.6e-55 219.9 217 57.6
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.3e-54 219.5 218 54.6
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 6.2e-54 217.2 211 54.5
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.4e-53 216.1 219 53.9
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.8e-53 215.7 210 56.2
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 3.1e-53 214.9 219 53.4
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 6.9e-53 213.8 185 58.9
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.0e-52 212.2 185 57.8
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 4.5e-52 211.1 216 53.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.9e-51 207.6 219 51.6
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 4.9e-51 207.6 262 49.2
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.1e-50 206.5 190 56.8
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.1e-50 206.5 167 64.7
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 4.2e-50 204.5 217 49.8
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 4.2e-50 204.5 143 68.5
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 5.4e-50 204.1 175 59.4
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.6e-49 202.6 219 53.4
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 1.6e-49 202.6 216 52.3
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 2.1e-49 202.2 216 50.5
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-48 199.1 155 66.5
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 5.1e-48 197.6 185 56.2
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 6.7e-48 197.2 220 52.3
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 6.7e-48 197.2 254 48.0
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 8.7e-48 196.8 216 50.0
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 3.3e-47 194.9 218 50.0
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 3.3e-47 194.9 222 50.0
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 3.3e-47 194.9 181 52.5
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 7.4e-47 193.7 143 69.2
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.3e-46 193.0 222 50.0
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.6e-46 192.6 162 58.0
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 1.6e-46 192.6 216 50.0
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.1e-45 189.9 162 56.8
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 1.1e-45 189.9 217 49.8
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.4e-45 189.5 224 50.9
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 5.3e-45 187.6 218 49.5
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 6.9e-45 187.2 143 66.4
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.6e-44 185.3 134 70.1
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.0e-43 183.3 168 56.0
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.7e-43 182.6 152 62.5
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 2.9e-43 181.8 221 48.9
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 3.8e-43 181.4 217 48.8
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 4.9e-43 181.0 135 66.7
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.5e-43 180.6 152 61.8
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-42 179.5 205 50.7
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.4e-42 179.5 164 58.5
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.2e-42 178.3 211 47.9
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 3.2e-42 178.3 222 47.7
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.2e-42 177.9 151 61.6
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.2e-41 176.4 165 56.4
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.6e-41 176.0 152 60.5
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-41 174.9 144 62.5
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.8e-40 172.6 204 48.5
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 3.0e-40 171.8 161 55.3
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 3.0e-40 171.8 180 51.7
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.7e-40 170.6 162 58.0
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 8.7e-40 170.2 224 46.9
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-39 169.5 113 72.6
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-39 169.5 113 72.6
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-39 168.7 219 47.5
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 9.6e-39 166.8 162 51.9
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-38 166.4 157 55.4
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 3.7e-38 164.9 157 56.7
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.2e-38 164.1 164 53.7
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 8.2e-38 163.7 219 45.2
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.1e-37 163.3 218 45.4
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-37 163.3 160 55.0
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.4e-37 162.9 141 53.9
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 4.0e-37 161.4 158 51.3
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 5.3e-37 161.0 157 54.8
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 5.8e-36 157.5 213 45.5
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.7e-35 156.0 218 44.5
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.7e-35 156.0 216 46.8
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.7e-35 156.0 186 48.9
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 2.2e-35 155.6 215 44.7
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 3.8e-35 154.8 215 45.1
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.1e-34 153.3 173 50.9
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.1e-34 153.3 156 50.6
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.9e-34 152.5 170 49.4
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.6e-33 149.4 160 53.1
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.1e-33 149.1 159 54.1
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.1e-33 149.1 159 54.1
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 2.7e-33 148.7 190 48.4
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.7e-33 148.7 163 53.4
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.1e-33 147.5 150 54.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 3.0e-32 145.2 166 52.4
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 5.1e-32 144.4 176 47.7
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.7e-32 143.7 109 67.9
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.1e-31 143.3 211 43.1
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 1.6e-30 139.4 177 47.5
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 6.3e-30 137.5 146 47.3
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.1e-29 134.8 85 78.8
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.9e-29 134.0 95 68.4
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.0e-29 133.7 114 52.6
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.0e-27 130.2 146 49.3
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 1.3e-27 129.8 158 47.5
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.3e-27 129.8 158 47.5
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 5.0e-27 127.9 129 47.3
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 7.2e-26 124.0 123 48.8
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.1e-25 122.5 155 38.1
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 4.6e-25 121.3 177 44.6
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 4.6e-25 121.3 85 70.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 4.6e-25 121.3 156 38.5
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.5e-23 116.3 150 38.0
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 9.7e-23 113.6 152 38.2
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 9.7e-23 113.6 152 40.1
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-22 113.2 137 51.8
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.8e-21 109.4 155 32.9
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 2.0e-20 105.9 154 50.0
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 5.9e-20 104.4 154 36.4
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 7.2e-18 97.4 147 39.5
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 9.4e-18 97.1 128 42.2
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 5.7e-15 87.8 152 31.6
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.4e-13 83.2 98 52.0
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.7e-11 76.3 144 30.6


User provided reference genes

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