Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 6.0e-116 421.0 238 100.0
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 6.3e-73 278.1 202 73.8
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 5.9e-71 271.6 199 72.4
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 3.3e-69 265.8 208 67.3
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-67 260.8 208 69.7
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-67 260.8 208 69.7
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 4.0e-67 258.8 200 67.5
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 7.5e-66 254.6 207 63.8
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 9.8e-66 254.2 194 68.0
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.7e-65 253.4 206 65.0
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 3.7e-65 252.3 190 68.9
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 4.9e-65 251.9 196 66.3
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 2.4e-64 249.6 208 67.3
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 3.1e-64 249.2 203 65.0
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 5.4e-64 248.4 208 63.0
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 7.0e-64 248.1 205 64.9
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 7.0e-64 248.1 205 64.9
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.6e-63 246.9 221 61.5
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 2.0e-63 246.5 209 61.2
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 4.5e-63 245.4 184 70.7
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 7.8e-63 244.6 200 63.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.0e-62 244.2 198 64.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.0e-62 244.2 205 64.4
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.3e-62 243.8 204 67.2
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.7e-62 243.4 198 65.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.7e-62 243.4 202 63.9
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 2.9e-62 242.7 209 59.8
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 5.0e-62 241.9 203 64.0
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 8.6e-62 241.1 206 63.1
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.1e-61 240.7 209 63.2
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 9.5e-61 237.7 203 62.1
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.2e-60 237.3 209 62.7
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.8e-60 236.1 181 71.3
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 2.8e-60 236.1 199 59.8
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 8.0e-60 234.6 196 64.8
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.4e-59 233.8 198 61.1
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 5.2e-59 231.9 203 65.5
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 6.8e-59 231.5 203 61.6
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-58 230.7 200 61.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 2.0e-58 229.9 195 62.1
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 5.8e-58 228.4 202 59.4
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 7.5e-58 228.0 196 62.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.3e-57 227.3 202 60.4
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.7e-57 226.9 209 58.9
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.7e-57 225.7 203 60.6
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 6.4e-57 224.9 196 61.2
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 8.3e-57 224.6 202 61.9
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 8.3e-57 224.6 193 60.6
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.1e-56 224.2 204 61.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-56 223.8 196 61.2
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.4e-56 223.0 204 60.3
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 3.2e-56 222.6 200 59.5
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 9.2e-56 221.1 209 56.9
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.2e-55 220.7 200 63.5
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 3.5e-55 219.2 198 59.1
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.0e-54 217.6 199 56.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.3e-54 217.2 201 56.7
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.3e-54 217.2 200 58.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.7e-54 216.9 198 57.6
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.3e-54 216.5 201 56.2
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 3.0e-54 216.1 201 58.7
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.9e-54 215.7 204 60.8
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 3.9e-54 215.7 208 56.2
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 8.6e-54 214.5 172 65.7
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.5e-53 213.8 197 57.4
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.9e-53 213.4 208 55.8
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.5e-53 213.0 203 57.6
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 5.6e-53 211.8 203 54.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 5.6e-53 211.8 209 55.5
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 4.7e-52 208.8 199 55.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 6.2e-52 208.4 205 54.1
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 6.2e-52 208.4 205 54.1
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 6.2e-52 208.4 203 56.7
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.2e-52 208.4 204 56.4
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 6.2e-52 208.4 201 55.2
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 8.0e-52 208.0 204 54.9
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.4e-51 207.2 203 55.7
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.4e-51 207.2 199 55.3
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.8e-51 206.8 206 53.9
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.2e-50 204.1 203 55.2
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.5e-50 203.8 200 58.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 7.5e-50 201.4 196 57.1
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 7.5e-50 201.4 213 52.6
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 9.8e-50 201.1 200 53.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.3e-49 200.7 203 52.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 2.2e-49 199.9 205 57.1
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.9e-49 198.7 202 55.0
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 8.3e-49 198.0 200 54.0
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.4e-48 197.2 229 48.9
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.9e-48 196.8 207 55.6
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.9e-48 196.8 207 55.6
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 7.0e-48 194.9 229 48.5
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 1.6e-47 193.7 207 54.6
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 3.5e-47 192.6 205 51.2
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.0e-46 191.0 145 66.9
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.7e-46 190.3 207 53.6
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 3.9e-46 189.1 202 50.5
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 3.9e-46 189.1 163 63.2
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.1e-45 187.6 197 54.3
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 3.3e-45 186.0 206 53.4
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 4.3e-45 185.7 173 56.1
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 9.5e-45 184.5 192 53.6
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 6.2e-44 181.8 201 52.2
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 8.1e-44 181.4 201 50.7
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 8.1e-44 181.4 206 48.5
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 5.2e-43 178.7 210 46.7
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 3.7e-41 172.6 201 47.3
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 3.2e-40 169.5 137 64.2
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 5.4e-40 168.7 195 49.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 3.0e-38 162.9 118 72.0
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 2.8e-36 156.4 214 44.9
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 8.1e-36 154.8 202 44.6
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.4e-35 153.3 195 45.6
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 4.9e-33 145.6 200 46.5
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.4e-32 143.3 199 45.7
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.5e-31 139.4 121 61.2
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 5.1e-30 135.6 85 77.6
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 6.6e-30 135.2 201 44.3
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.1e-29 134.4 220 41.4
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 3.1e-27 126.3 194 37.1
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 6.9e-27 125.2 194 37.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 9.0e-27 124.8 194 39.2
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-26 123.6 194 37.1
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-26 123.6 194 37.1
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.2e-23 114.4 199 37.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.6e-23 112.5 199 36.7
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.7e-22 110.5 186 33.9
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 6.6e-22 108.6 194 35.6
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.5e-21 107.5 198 37.4
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 2.5e-21 106.7 180 37.2
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 9.6e-21 104.8 180 35.0
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.8e-19 100.5 184 38.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 9.9e-18 94.7 193 34.2
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.7e-17 94.0 175 38.3
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 2.1e-12 77.0 88 45.5
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.8e-11 73.9 68 60.3
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 2.4e-11 73.6 68 58.8
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 2.4e-11 73.6 68 58.8
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.2e-10 71.2 69 59.4
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 3.4e-10 69.7 64 59.4
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 2.2e-09 67.0 234 23.5
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 6.4e-09 65.5 95 35.8
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 8.4e-09 65.1 127 39.4
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 4.2e-08 62.8 49 61.2
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 7.1e-08 62.0 63 49.2
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 3.0e-06 56.6 114 28.1


User provided reference genes

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