Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 7.0e-164 580.5 278 100.0
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.2e-128 463.4 278 77.0
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.1e-128 462.6 278 77.3
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 2.8e-128 462.2 280 78.2
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 3.6e-128 461.8 278 78.4
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.1e-127 460.3 280 77.9
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 3.1e-127 458.8 278 77.7
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 5.4e-124 448.0 280 74.3
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 7.0e-124 447.6 278 74.8
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 7.0e-124 447.6 279 74.9
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.0e-122 443.7 278 74.5
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 2.3e-122 442.6 282 73.8
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 3.0e-122 442.2 289 72.3
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 6.6e-122 441.0 278 74.1
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 7.3e-121 437.6 281 72.2
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.2e-120 436.8 278 72.3
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.6e-120 436.4 281 71.9
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.3e-119 432.6 281 71.5
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 4.0e-119 431.8 277 72.9
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 5.2e-119 431.4 281 71.2
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 6.8e-119 431.0 278 71.9
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 6.8e-119 431.0 281 70.8
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 8.9e-119 430.6 285 69.5
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 8.9e-119 430.6 282 69.9
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.5e-118 429.9 278 71.2
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 2.6e-118 429.1 280 74.3
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 3.4e-118 428.7 278 70.9
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 5.8e-118 427.9 281 71.2
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 9.9e-118 427.2 280 71.8
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 4.9e-117 424.9 280 70.7
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.3e-117 424.1 392 56.1
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 2.4e-116 422.5 280 72.1
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 4.1e-116 421.8 279 70.3
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.4e-116 421.4 283 70.0
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.7e-115 419.1 281 71.5
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.3e-114 416.8 278 71.9
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 3.0e-114 415.6 278 70.9
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 5.1e-114 414.8 280 71.4
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.5e-113 413.3 354 60.2
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.3e-113 412.1 385 55.8
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 9.5e-113 410.6 316 64.2
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.6e-112 409.8 277 69.7
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.1e-112 409.5 268 70.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.1e-112 407.5 284 69.0
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.1e-112 407.5 284 69.0
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.1e-111 407.1 260 73.5
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 2.4e-111 406.0 276 71.0
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 3.1e-111 405.6 278 69.8
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 4.0e-111 405.2 277 70.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 4.0e-111 405.2 306 64.7
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 5.2e-111 404.8 276 68.8
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 6.8e-111 404.4 280 68.9
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 6.8e-111 404.4 284 69.0
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 6.8e-111 404.4 284 69.0
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.2e-110 403.7 278 68.7
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.0e-110 402.9 289 67.1
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 2.6e-110 402.5 284 68.0
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 2.6e-110 402.5 273 69.2
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.3e-109 400.2 278 69.8
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 3.8e-109 398.7 281 66.2
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 4.9e-109 398.3 324 61.1
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.4e-108 396.7 281 68.3
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.9e-108 396.4 276 69.9
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 2.4e-108 396.0 282 66.3
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 2.4e-108 396.0 282 66.3
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 2.4e-108 396.0 280 66.1
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 3.2e-108 395.6 284 67.3
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 5.4e-108 394.8 281 65.8
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 7.1e-108 394.4 281 66.2
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 9.2e-108 394.0 281 66.2
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 9.2e-108 394.0 281 65.8
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.2e-107 393.7 281 65.5
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 2.7e-107 392.5 282 66.0
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 2.7e-107 392.5 282 66.0
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 3.5e-107 392.1 281 65.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 3.5e-107 392.1 277 66.4
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 2.3e-106 389.4 283 65.0
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 3.0e-106 389.0 281 65.8
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 3.0e-106 389.0 281 65.8
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 3.0e-106 389.0 281 65.8
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 6.6e-106 387.9 281 65.1
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.9e-105 386.3 278 68.7
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.5e-105 386.0 281 64.4
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.1e-103 380.6 235 72.8
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 9.0e-103 377.5 275 66.2
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 4.4e-102 375.2 235 71.5
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.2e-101 372.9 279 64.5
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.1e-100 370.5 237 72.6
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 7.1e-100 367.9 237 74.3
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 4.6e-99 365.2 309 60.2
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 4.3e-97 358.6 280 61.1
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 1.3e-96 357.1 270 64.1
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 8.1e-96 354.4 323 56.3
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 5.3e-95 351.7 280 62.1
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.5e-94 348.6 280 61.4
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 7.6e-94 347.8 279 61.3
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 4.6e-91 338.6 288 59.0
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 5.1e-90 335.1 284 56.0
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 7.6e-86 321.2 186 79.0
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.6e-80 303.5 187 75.9
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.1e-79 300.8 273 56.0
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.5e-78 297.0 216 65.3
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 4.5e-78 295.4 323 49.2
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.0e-77 294.3 206 67.5
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 2.9e-77 292.7 305 52.5
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 8.2e-72 274.6 250 54.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.4e-71 273.1 228 57.9
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.2e-67 260.8 187 64.7
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 2.2e-64 250.0 229 51.5
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 2.0e-62 243.4 259 47.1
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 5.9e-62 241.9 145 75.9
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.3e-58 229.9 249 44.6
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 3.1e-55 219.5 197 56.9
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.0e-53 212.2 194 54.6
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 5.0e-45 185.7 111 76.6
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 5.0e-45 185.7 111 76.6
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.3e-32 144.4 93 74.2
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.7e-32 144.1 90 72.2
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.8e-31 140.6 94 68.1
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.6e-30 137.5 94 67.0
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 4.5e-30 136.0 92 70.7
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 1.9e-28 130.6 95 63.2
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 1.0e-26 124.8 95 62.1
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.0e-25 120.6 89 64.0
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 4.4e-25 119.4 91 64.8
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.1e-23 114.8 86 61.6
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.2e-22 111.3 75 68.0
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 4.5e-22 109.4 61 78.7
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.1e-20 104.8 52 88.5
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.1e-20 104.8 112 47.3
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 9.5e-20 101.7 59 76.3
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.8e-19 100.1 51 76.5
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 4.7e-19 99.4 97 48.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 4.0e-18 96.3 65 64.6
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.1e-15 88.2 57 70.2
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-14 84.3 46 80.4
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.3e-13 81.3 65 63.1
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.6e-11 74.3 38 78.9
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.8e-10 70.9 35 80.0
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 7.5e-09 65.5 53 54.7
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 7.8e-06 55.5 29 65.5
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 7.8e-06 55.5 29 65.5


User provided reference genes

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