Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 9.9e-52 206.5 101 100.0
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 9.9e-52 206.5 101 100.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 6.2e-46 187.2 101 91.1
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 3.8e-35 151.4 101 73.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.1e-34 149.8 99 73.7
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.4e-34 149.4 101 71.3
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 7.2e-34 147.1 101 68.3
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 7.2e-34 147.1 101 71.3
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 9.3e-34 146.7 101 70.3
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 4.6e-33 144.4 101 70.3
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.0e-32 143.3 101 69.3
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 69.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 68.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 69.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 68.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 69.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 69.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 68.3
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 3.9e-32 141.4 101 66.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 6.7e-32 140.6 101 67.3
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 6.7e-32 140.6 98 72.4
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.1e-31 139.8 101 67.3
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-31 139.8 101 67.3
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.1e-31 139.8 100 66.0
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.1e-31 139.8 101 66.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.5e-31 139.4 101 68.3
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 2.5e-31 138.7 100 66.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 2.5e-31 138.7 101 67.3
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.5e-31 138.7 101 66.3
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.3e-31 138.3 101 65.3
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 3.3e-31 138.3 101 66.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 4.3e-31 137.9 99 67.7
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 5.7e-31 137.5 101 64.4
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 7.4e-31 137.1 101 65.3
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 7.4e-31 137.1 100 65.0
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.3e-30 136.3 100 62.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.8e-30 135.2 101 66.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 4.8e-30 134.4 98 64.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 4.8e-30 134.4 101 64.4
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.3e-30 134.0 101 63.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.4e-29 132.9 99 64.6
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.8e-29 132.5 99 62.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.4e-29 132.1 101 63.4
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 3.1e-29 131.7 93 68.8
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.1e-29 131.7 101 66.3
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 5.3e-29 131.0 99 64.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 6.9e-29 130.6 97 63.9
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 9.0e-29 130.2 102 63.7
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.2e-28 129.8 101 64.4
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.6e-28 128.6 99 67.7
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 3.4e-28 128.3 102 63.7
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 4.5e-28 127.9 101 59.4
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.7e-28 127.1 99 64.6
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.3e-27 126.3 96 62.5
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.3e-27 126.3 100 61.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-27 125.9 101 64.4
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.2e-27 125.6 95 62.1
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 2.9e-27 125.2 97 60.8
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.1e-26 123.2 101 60.4
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.4e-26 122.9 101 62.4
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.4e-26 122.9 101 62.4
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.9e-26 122.5 98 61.2
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.5e-26 122.1 99 64.6
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.5e-26 122.1 98 61.2
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 3.2e-26 121.7 91 63.7
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.5e-26 120.9 101 60.4
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.2e-26 120.6 99 62.6
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 9.4e-26 120.2 102 60.8
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.2e-25 119.8 102 60.8
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.2e-25 119.8 100 60.0
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.6e-25 119.4 102 59.8
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.6e-25 119.4 91 63.7
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.1e-25 119.0 100 61.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.6e-25 118.2 100 60.0
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 4.6e-25 117.9 89 67.4
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 7.9e-25 117.1 104 58.7
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 7.9e-25 117.1 93 64.5
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.0e-24 116.7 89 64.0
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.0e-24 115.2 103 60.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 4.3e-23 111.3 104 56.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 4.3e-23 111.3 97 57.7
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 5.7e-23 110.9 101 56.4
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 5.7e-23 110.9 101 56.4
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.8e-22 108.6 103 58.3
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.1e-21 106.7 98 54.1
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.1e-21 104.8 79 65.8
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 9.1e-21 103.6 91 57.1
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.5e-20 102.8 100 54.0
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 7.7e-20 100.5 94 54.3
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.0e-19 100.1 82 61.0
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.0e-19 100.1 101 56.4
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.4e-18 96.3 94 52.1
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 4.2e-18 94.7 101 52.5
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 4.2e-18 94.7 98 53.1
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 7.2e-18 94.0 88 54.5
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-17 93.2 80 58.8
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 4.7e-17 91.3 77 58.4
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 4.7e-17 91.3 84 54.8
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 7.9e-17 90.5 98 44.9
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.9e-16 88.2 80 53.8
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.9e-16 88.2 80 53.8
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 8.8e-16 87.0 82 52.4
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.3e-14 83.2 84 52.4
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 4.1e-13 78.2 82 50.0
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 7.0e-13 77.4 89 50.6
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.2e-12 76.6 82 48.8
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.6e-12 76.3 68 55.9
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.6e-12 75.5 70 52.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.5e-12 75.1 63 57.1
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.5e-12 75.1 77 51.9
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 4.5e-12 74.7 72 51.4
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 4.5e-12 74.7 72 52.8
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 4.5e-12 74.7 69 56.5
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.7e-12 73.9 85 48.2
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 1.0e-11 73.6 70 54.3
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.3e-11 73.2 69 55.1
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.2e-11 72.4 62 59.7
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.2e-11 72.4 62 56.5
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 2.2e-11 72.4 81 49.4
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.2e-11 72.4 79 51.9
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 2.2e-11 72.4 67 59.7
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.9e-11 72.0 70 52.9
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.9e-11 72.0 70 52.9
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.5e-10 69.7 74 52.7
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.5e-10 69.7 74 52.7
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.5e-10 69.7 82 47.6
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.5e-10 68.9 62 54.8
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 2.5e-10 68.9 87 48.3
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.2e-10 68.6 76 50.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 4.2e-10 68.2 69 47.8
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 5.5e-10 67.8 62 54.8
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 5.5e-10 67.8 76 47.4
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 5.5e-10 67.8 110 38.2
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.2e-09 66.6 69 47.8
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.2e-09 66.6 62 53.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.2e-09 66.6 62 54.8
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 1.6e-09 66.2 49 65.3
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.6e-09 66.2 64 53.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.1e-09 65.9 84 46.4
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 2.1e-09 65.9 90 47.8
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.1e-09 65.9 71 47.9
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 2.1e-09 65.9 76 47.4
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.6e-09 65.1 63 54.0
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.6e-09 65.1 80 46.2
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.6e-09 65.1 78 47.4
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 6.1e-09 64.3 60 56.7
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 8.0e-09 63.9 88 45.5
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.4e-08 63.2 76 48.7
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.4e-08 63.2 62 50.0
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.8e-08 62.8 67 49.3
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.0e-08 62.0 59 44.1
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.0e-08 61.6 80 43.8
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 4.0e-08 61.6 61 49.2
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.7e-08 60.8 47 59.6
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 8.8e-08 60.5 79 41.8
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.8e-08 60.5 62 48.4
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.1e-07 60.1 59 44.1
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-07 59.3 63 52.4
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-07 59.3 63 54.0
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-07 59.3 63 52.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.0e-07 59.3 63 52.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.0e-07 59.3 63 54.0
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-07 59.3 89 40.4
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-07 59.3 89 40.4
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-07 59.3 89 40.4
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 4.4e-07 58.2 63 50.8
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.4e-07 58.2 83 42.2
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.5e-07 57.4 97 38.1
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 50.8
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.7e-06 56.2 80 43.8
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.7e-06 56.2 80 43.8
CAN.G353.10 Capsicum annuum HOM05D003524 ORTHO05D003988 2.8e-06 55.5 63 54.0
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 3.7e-06 55.1 63 47.6
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 3.7e-06 55.1 63 49.2
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 3.7e-06 55.1 63 47.6
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 3.7e-06 55.1 63 47.6
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 3.7e-06 55.1 63 49.2
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-06 54.7 63 49.2
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 4.8e-06 54.7 63 49.2
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 4.8e-06 54.7 63 49.2
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 6.3e-06 54.3 63 49.2
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 6.3e-06 54.3 63 49.2
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 6.3e-06 54.3 63 49.2
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 8.2e-06 53.9 63 47.6
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 8.2e-06 53.9 63 47.6
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 8.2e-06 53.9 63 49.2


User provided reference genes

Program Settings