Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 8.9e-235 816.6 428 100.0
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 2.4e-195 685.6 439 80.9
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 7.6e-194 680.6 436 82.6
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 9.9e-194 680.2 431 80.5
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.7e-193 679.5 432 80.6
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.4e-192 676.4 383 88.0
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 2.3e-190 669.1 391 89.5
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 3.9e-190 668.3 431 78.9
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 8.7e-190 667.2 405 84.7
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 8.7e-190 667.2 434 81.3
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 8.7e-190 667.2 434 78.1
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 8.7e-190 667.2 438 78.5
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 2.5e-189 665.6 434 79.7
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 3.3e-189 665.2 431 78.2
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 3.3e-189 665.2 372 90.1
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 4.3e-189 664.8 395 84.8
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 2.1e-188 662.5 408 82.8
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.1e-188 662.5 434 79.7
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 8.2e-188 660.6 453 75.9
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.1e-187 660.2 432 82.6
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.4e-187 659.8 384 87.2
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 1.4e-187 659.8 419 79.7
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.1e-187 658.7 432 78.5
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.1e-187 658.7 432 79.9
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 9.0e-187 657.1 433 80.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.2e-186 656.8 437 78.7
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.5e-186 656.4 371 87.1
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 2.6e-186 655.6 385 86.8
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 3.4e-186 655.2 383 88.5
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 5.8e-186 654.4 400 83.8
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 5.8e-186 654.4 432 80.8
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 1.3e-185 653.3 394 84.3
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.7e-185 652.9 412 81.8
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.7e-185 652.9 385 86.5
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.7e-185 652.9 438 77.4
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.2e-185 652.5 432 77.8
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 2.2e-185 652.5 394 84.3
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.9e-185 652.1 432 80.1
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 2.9e-185 652.1 432 80.1
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 2.9e-185 652.1 426 80.3
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 3.8e-185 651.7 379 87.6
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 3.8e-185 651.7 419 81.1
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 3.8e-185 651.7 435 81.8
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 6.5e-185 651.0 393 84.5
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 8.4e-185 650.6 395 87.8
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 1.1e-184 650.2 400 83.2
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 1.1e-184 650.2 400 83.2
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.1e-184 650.2 441 77.6
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.9e-184 649.4 432 79.6
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.9e-184 649.4 400 83.8
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.5e-184 649.0 432 81.0
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 4.2e-184 648.3 396 83.8
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 4.2e-184 648.3 400 83.0
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 5.5e-184 647.9 382 86.9
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 9.3e-184 647.1 414 83.3
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 9.3e-184 647.1 414 80.4
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 9.3e-184 647.1 386 87.6
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.2e-183 646.7 433 81.5
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.2e-183 646.7 432 79.4
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.1e-183 646.0 430 75.8
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 2.7e-183 645.6 455 77.6
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 2.7e-183 645.6 431 79.4
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 3.5e-183 645.2 428 81.5
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.6e-183 644.8 402 83.3
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 7.9e-183 644.0 433 81.3
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.8e-182 642.9 382 86.4
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.8e-182 642.9 393 85.8
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.3e-182 642.5 384 87.5
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 6.7e-182 641.0 389 85.1
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 8.7e-182 640.6 423 82.7
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 1.1e-181 640.2 392 85.5
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 1.5e-181 639.8 402 82.6
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 5.7e-181 637.9 458 73.8
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 1.3e-180 636.7 408 82.8
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.2e-180 636.0 408 83.3
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 8.2e-180 634.0 428 79.9
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.1e-179 633.6 384 81.2
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 2.4e-179 632.5 365 90.1
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 5.3e-179 631.3 406 83.0
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.2e-178 630.2 388 82.0
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.2e-178 630.2 365 89.9
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 5.9e-178 627.9 395 82.8
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 1.0e-177 627.1 428 79.9
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 5.5e-176 621.3 388 84.5
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 9.4e-176 620.5 388 84.8
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.2e-175 620.2 388 84.3
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-175 620.2 329 91.2
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.6e-175 619.8 400 82.0
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.1e-175 619.4 400 82.5
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.7e-175 619.0 399 82.5
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 2.3e-174 615.9 386 84.2
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.3e-174 615.9 386 84.2
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 3.0e-174 615.5 402 81.1
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 8.8e-174 614.0 329 90.9
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.3e-173 612.1 409 80.4
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 5.7e-173 611.3 385 83.1
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.8e-171 606.3 375 81.3
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 5.9e-170 601.3 389 78.4
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 7.7e-170 600.9 433 76.0
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 2.9e-169 599.0 389 77.6
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.5e-165 586.6 366 80.6
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-165 585.9 414 77.1
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-165 585.9 414 77.1
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 6.3e-164 581.3 397 72.5
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 8.2e-164 580.9 382 81.9
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.4e-163 580.1 315 87.9
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 4.5e-162 575.1 404 73.0
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.9e-161 572.4 360 77.2
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 5.0e-161 571.6 428 69.6
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 5.5e-160 568.2 388 73.5
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.6e-159 566.6 360 76.7
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.1e-157 560.5 388 76.8
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 2.6e-157 559.3 405 69.4
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 9.1e-147 524.2 301 84.7
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.2e-146 523.9 371 76.5
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 5.9e-146 521.5 283 90.5
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.9e-144 516.5 311 81.7
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.0e-138 496.5 348 71.8
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 1.1e-136 490.7 327 81.0
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 7.2e-136 488.0 351 69.8
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 9.5e-136 487.6 329 72.9
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.8e-134 483.4 329 72.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.3e-134 483.0 330 72.7
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.5e-133 480.3 329 72.0
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.0e-133 479.9 350 69.7
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 9.8e-133 477.6 329 72.0
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 2.8e-132 476.1 327 72.2
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 2.8e-132 476.1 327 72.2
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 2.8e-132 476.1 327 72.2
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 4.9e-132 475.3 329 71.7
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 5.0e-129 465.3 312 77.6
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 9.5e-128 461.1 431 62.4
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.3e-121 440.7 277 82.3
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 6.2e-119 431.8 330 63.3
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 4.9e-116 422.2 315 66.0
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 8.3e-116 421.4 335 60.6
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 9.5e-112 407.9 282 72.0
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 3.6e-111 406.0 359 65.2
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 4.0e-110 402.5 293 74.4
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.4e-107 394.0 224 86.6
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 7.8e-90 335.1 235 76.6
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 8.4e-76 288.5 193 76.2
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 7.9e-74 282.0 234 64.1
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 3.5e-66 256.5 249 56.2
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.1e-62 245.0 276 49.6
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 5.5e-59 232.6 182 64.8
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 4.6e-58 229.6 253 50.6
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 8.8e-57 225.3 123 83.7
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 4.3e-56 223.0 182 62.6
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.5e-51 207.2 311 39.9
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 6.7e-49 199.1 178 57.9
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 8.2e-47 192.2 172 57.0
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 3.5e-45 186.8 101 85.1
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 7.7e-45 185.7 171 63.7
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.0e-44 185.3 148 65.5
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 5.0e-44 183.0 100 88.0
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 3.2e-43 180.3 101 82.2
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 1.6e-42 177.9 104 82.7
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 6.7e-41 172.6 178 53.9
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 5.7e-40 169.5 100 80.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.2e-36 157.5 77 92.2
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 9.4e-35 152.1 122 65.6
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 2.7e-34 150.6 212 39.6
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.0e-33 148.7 134 61.2
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.6e-32 144.1 76 82.9
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.7e-28 131.3 72 88.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.7e-23 114.8 76 75.0
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 1.0e-20 105.5 181 40.3
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.3e-20 105.1 106 54.7
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 3.5e-13 80.5 77 59.7
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 3.5e-13 80.5 77 59.7
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 2.9e-12 77.4 49 79.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.1e-11 75.5 53 67.9
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 6.8e-09 66.2 36 86.1
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 4.4e-08 63.5 45 68.9


User provided reference genes

Program Settings