Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 0.0e+00 1105.1 556 100.0
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 8.9e-211 737.3 560 69.3
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 7.1e-200 701.0 553 67.3
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.6e-199 699.9 558 65.8
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 3.9e-198 695.3 591 63.1
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 5.1e-198 694.9 556 67.3
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 5.1e-198 694.9 560 66.1
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 2.1e-196 689.5 556 64.9
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 6.2e-196 688.0 557 63.6
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 6.2e-196 688.0 554 65.7
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.4e-195 686.0 554 65.9
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 5.2e-195 684.9 572 63.8
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 9.9e-194 680.6 551 65.3
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.3e-193 680.2 554 65.3
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 8.4e-193 677.6 561 62.7
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 3.2e-192 675.6 567 63.8
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 7.1e-192 674.5 599 62.1
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.2e-191 673.7 556 64.4
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 4.6e-191 671.8 529 67.3
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 7.8e-191 671.0 556 64.6
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.7e-190 669.8 557 64.1
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.9e-189 666.4 565 61.8
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.3e-189 665.6 603 60.7
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.3e-189 665.6 590 61.2
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.6e-188 662.1 601 60.2
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 6.2e-188 661.4 567 61.6
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 1.4e-187 660.2 557 64.5
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.4e-187 659.4 559 63.5
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 1.5e-186 656.8 577 62.2
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 2.6e-186 656.0 563 60.6
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.9e-185 652.5 560 62.1
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.4e-184 649.4 560 61.8
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.4e-184 649.4 560 62.0
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 7.1e-184 647.9 569 61.3
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.6e-183 646.7 557 61.8
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.3e-182 643.7 550 62.7
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 5.1e-182 641.7 564 61.7
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-181 640.6 557 61.8
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 7.4e-181 637.9 557 61.2
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 6.2e-180 634.8 557 60.3
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 3.1e-179 632.5 604 57.6
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 7.6e-178 627.9 556 60.6
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 7.6e-178 627.9 575 60.2
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 6.4e-177 624.8 556 60.3
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 6.4e-177 624.8 522 63.2
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.9e-176 623.2 556 60.4
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 3.2e-176 622.5 557 60.3
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.2e-175 620.5 548 60.8
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.8e-174 616.7 448 71.0
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 2.5e-173 612.8 567 59.1
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.3e-173 612.5 557 60.1
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 1.6e-172 610.1 518 63.5
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.8e-171 606.7 552 59.8
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 3.8e-169 599.0 560 58.8
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 3.8e-169 599.0 556 58.8
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 5.5e-168 595.1 495 62.6
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 2.7e-167 592.8 448 68.5
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 3.5e-167 592.4 558 59.7
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.3e-166 589.7 557 58.9
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 8.7e-166 587.8 554 56.7
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.1e-165 587.4 557 58.7
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 4.8e-164 582.0 522 60.3
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.2e-162 577.4 559 55.8
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.7e-161 573.5 560 57.5
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 5.5e-160 568.5 562 57.1
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.8e-158 563.5 487 60.8
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 8.7e-158 561.2 557 54.6
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.5e-157 560.5 509 58.9
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.5e-157 559.7 548 57.3
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 7.4e-157 558.1 475 60.6
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 1.5e-154 550.4 528 57.8
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 3.4e-154 549.3 557 52.2
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.0e-150 536.2 561 53.3
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.3e-148 530.8 554 52.7
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.7e-143 513.1 568 50.7
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.0e-142 511.1 559 51.7
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.4e-142 510.8 362 72.7
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 3.9e-142 509.2 500 54.6
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.0e-141 506.9 561 52.4
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 2.0e-141 506.9 500 53.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 3.3e-141 506.1 415 63.1
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 1.7e-140 503.8 483 57.3
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 1.8e-139 500.4 550 50.9
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.8e-139 500.4 448 60.5
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.6e-138 497.3 598 48.7
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 3.5e-138 496.1 572 50.0
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 5.0e-137 492.3 576 49.8
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 5.0e-137 492.3 572 49.8
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 5.0e-137 492.3 572 49.8
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 2.5e-136 490.0 512 51.2
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 3.2e-136 489.6 566 48.4
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 3.2e-136 489.6 566 48.4
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.4e-134 484.2 403 63.5
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 6.3e-132 475.3 551 49.4
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.7e-130 469.9 571 49.0
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.5e-130 469.5 436 59.2
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 7.7e-130 468.4 459 56.4
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.5e-128 463.4 463 54.4
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.7e-127 459.9 471 54.6
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.2e-120 436.0 557 47.6
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 4.0e-118 429.5 508 49.2
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 9.8e-117 424.9 586 45.2
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.6e-114 417.5 467 49.0
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 7.3e-112 408.7 480 49.2
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.6e-111 407.5 429 51.3
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 4.0e-110 402.9 561 44.4
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.6e-109 400.2 541 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 4.4e-109 399.4 498 43.8
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.3e-104 383.3 514 43.8
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 5.6e-104 382.5 414 51.0
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 1.2e-103 381.3 414 50.2
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 1.9e-96 357.5 461 47.9
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 2.6e-93 347.1 619 37.3
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.4e-93 346.7 518 40.7
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 4.9e-92 342.8 229 74.2
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.4e-91 339.3 263 66.9
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 2.5e-88 330.5 392 47.2
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 5.2e-86 322.8 439 46.5
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 4.1e-83 313.2 377 49.1
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.0e-81 308.5 447 42.5
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-79 301.6 282 55.0
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 6.2e-79 299.3 313 53.7
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 8.4e-68 262.3 372 45.2
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 7.9e-66 255.8 348 42.8
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 3.9e-57 226.9 312 44.9
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 1.4e-51 208.4 149 69.8
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 1.3e-44 185.3 197 50.3
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.7e-36 158.3 400 30.0
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 6.5e-36 156.4 142 62.0
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.4e-30 138.7 97 70.1
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 3.7e-23 114.0 221 34.4
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 1.8e-22 111.7 179 37.4
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 2.4e-22 111.3 71 77.5
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.6e-21 108.6 69 76.8
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 1.7e-20 105.1 73 72.6
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.0e-20 103.6 68 73.5
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 8.2e-15 86.3 66 63.6
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.8e-14 85.1 66 68.2
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.8e-14 85.1 70 62.9
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 6.5e-12 76.6 51 74.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.0e-09 69.3 76 52.6
QL02p017308 Quercus lobata HOM05D005024 ORTHO05D006396 1.2e-08 65.9 76 53.9
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.5e-08 65.5 131 33.6
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.0e-08 65.1 170 27.6
Gohir.D07G167350 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.4e-08 63.9 90 43.3
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 5.7e-08 63.5 121 34.7
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.7e-07 62.0 170 28.8
Gohir.A01G114950 Gossypium hirsutum HOM05D005024 ORTHO05D029835 3.7e-07 60.8 90 41.1
Gohir.A01G201250 Gossypium hirsutum HOM05D005024 ORTHO05D029835 3.7e-07 60.8 90 41.1
Gorai.003G122400 Gossypium raimondii HOM05D005024 ORTHO05D029835 3.7e-07 60.8 90 41.1
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 4.8e-07 60.5 169 29.0
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 4.8e-07 60.5 91 37.4
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 6.3e-07 60.1 93 38.7
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 6.3e-07 60.1 91 37.4
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 6.3e-07 60.1 97 37.1
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 8.3e-07 59.7 168 29.2
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 1.1e-06 59.3 103 36.9
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.1e-06 59.3 91 38.5
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.1e-06 59.3 91 38.5
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.1e-06 59.3 90 38.9
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.1e-06 59.3 90 38.9
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.4e-06 58.9 123 31.7
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 1.4e-06 58.9 160 28.8
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.8e-06 58.5 161 28.0
Gohir.D07G161533 Gossypium hirsutum HOM05D005024 ORTHO05D029835 2.4e-06 58.2 90 40.0
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 2.4e-06 58.2 92 37.0
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 2.4e-06 58.2 92 35.9
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 4.1e-06 57.4 91 37.4
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 4.1e-06 57.4 91 35.2
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 5.4e-06 57.0 91 37.4
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 5.4e-06 57.0 102 34.3
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 7.0e-06 56.6 90 37.8
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 9.1e-06 56.2 178 27.5
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 9.1e-06 56.2 94 34.0


User provided reference genes

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