Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 3.6e-130 469.5 321 100.0
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 1.8e-52 211.5 327 63.6
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.3e-50 205.3 323 62.2
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 2.8e-45 187.6 321 60.1
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 8.9e-44 182.6 321 60.4
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 1.5e-43 181.8 321 59.5
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 5.8e-43 179.9 326 61.0
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 6.4e-42 176.4 319 61.4
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 6.4e-42 176.4 315 62.5
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 6.4e-42 176.4 331 61.6
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 7.1e-41 172.9 331 59.8
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 3.5e-40 170.6 307 63.2
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 4.7e-37 160.2 302 60.6
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 6.2e-37 159.8 320 50.3
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 8.1e-37 159.5 323 57.0
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 6.8e-36 156.4 174 52.3
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 5.8e-35 153.3 319 58.0
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 7.6e-35 152.9 313 58.8
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 6.0e-32 143.3 325 52.6
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.0e-32 143.3 310 57.1
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 1.1e-30 139.0 300 58.0
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 1.5e-30 138.7 318 57.5
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 1.9e-30 138.3 299 60.9
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 1.9e-30 138.3 315 58.7
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 1.4e-28 132.1 319 55.5
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 2.4e-28 131.3 321 55.1
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 2.0e-27 128.3 309 54.4
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 8.4e-26 122.9 319 54.2
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 8.4e-26 122.9 318 53.1
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.9e-25 121.7 324 52.8
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 1.9e-25 121.7 215 69.3
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 2.4e-25 121.3 328 52.1
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 3.2e-25 120.9 299 55.5
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 7.1e-25 119.8 176 43.8
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 1.2e-24 119.0 328 52.1
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 2.7e-24 117.9 256 62.1
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 2.7e-24 117.9 324 51.5
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 3.5e-24 117.5 266 53.0
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 4.6e-24 117.1 316 51.9
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 1.7e-23 115.2 287 57.8
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 1.7e-23 115.2 289 57.1
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 2.3e-23 114.8 326 52.5
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 5.1e-23 113.6 318 53.8
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 5.1e-23 113.6 319 54.2
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.5e-22 112.1 328 51.5
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 1.9e-22 111.7 287 57.5
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 2.5e-22 111.3 234 65.0
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 4.3e-22 110.5 327 51.4
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 9.6e-22 109.4 242 63.2
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 1.3e-21 109.0 208 71.2
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 1.3e-21 109.0 320 51.2
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.6e-21 108.6 244 61.5
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 2.1e-21 108.2 281 52.3
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 4.8e-21 107.1 244 61.1
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 1.1e-20 105.9 260 53.5
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 1.8e-20 105.1 302 55.3
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 1.2e-19 102.4 331 45.3
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 1.3e-18 99.0 211 66.8
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 2.2e-18 98.2 293 54.6
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.9e-18 97.8 333 38.4
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 6.4e-18 96.7 203 66.5
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 8.4e-18 96.3 328 49.1
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 5.4e-17 93.6 302 50.0
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 1.2e-16 92.4 280 56.1
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 2.1e-16 91.7 187 39.0
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.0e-15 89.4 223 54.7
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 3.0e-15 87.8 223 54.7
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 3.9e-15 87.4 242 58.7
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 6.6e-15 86.7 210 66.2
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 8.7e-15 86.3 176 71.0
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 4.3e-14 84.0 110 45.5
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 2.1e-13 81.6 127 38.6
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 2.1e-13 81.6 189 35.4
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 6.2e-13 80.1 75 56.0
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 1.1e-12 79.3 201 55.7
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 5.3e-12 77.0 89 48.3
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 2.6e-11 74.7 191 33.0
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 3.4e-11 74.3 164 32.9
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 1.3e-10 72.4 179 66.5
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 2.9e-10 71.2 78 52.6
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 1.1e-09 69.3 288 49.7
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 1.4e-09 68.9 165 30.9
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 2.4e-09 68.2 181 31.5
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 5.4e-09 67.0 162 31.5
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 1.6e-08 65.5 163 33.1
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 2.1e-08 65.1 162 59.9
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 2.1e-08 65.1 289 50.5
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 2.7e-08 64.7 292 49.0
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 7.9e-08 63.2 168 29.8
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 1.0e-07 62.8 167 29.9
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 3.9e-07 60.8 74 45.9
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 3.3e-06 57.8 164 29.9
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 5.6e-06 57.0 179 24.6


User provided reference genes

Program Settings