Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.2e-151 537.7 278 100.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 8.4e-85 317.8 269 62.5
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.9e-84 316.6 256 65.2
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.9e-84 316.6 222 74.3
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 6.0e-83 311.6 265 64.2
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.8e-82 310.1 271 62.0
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 7.4e-81 304.7 232 68.1
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 9.6e-81 304.3 280 57.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 3.7e-80 302.4 267 62.2
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 4.8e-80 302.0 278 62.6
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 2.4e-79 299.7 207 74.9
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 3.1e-79 299.3 266 60.9
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 2.6e-78 296.2 226 68.6
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 4.5e-78 295.4 276 60.1
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 4.5e-78 295.4 266 62.8
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.5e-78 295.4 276 58.7
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 7.6e-78 294.7 276 58.7
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 7.6e-78 294.7 276 59.1
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.0e-77 294.3 209 71.3
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.0e-77 294.3 276 58.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.7e-77 293.5 267 62.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.8e-77 292.4 267 64.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 8.4e-77 291.2 210 71.0
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.4e-76 290.4 284 59.2
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.9e-76 290.0 270 61.5
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.2e-76 288.9 214 71.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 4.2e-76 288.9 259 63.7
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 9.3e-76 287.7 223 70.0
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.2e-75 287.3 274 57.3
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.6e-75 287.0 218 70.2
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.5e-75 285.8 267 61.4
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 4.6e-75 285.4 207 69.1
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 4.6e-75 285.4 285 60.4
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 6.0e-75 285.0 229 67.2
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 6.0e-75 285.0 213 71.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.9e-75 284.6 218 69.7
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.0e-74 284.3 274 59.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.0e-74 284.3 238 66.0
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 2.3e-74 283.1 226 67.7
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.3e-74 283.1 269 57.6
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.0e-74 282.7 218 69.3
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.0e-74 282.7 207 66.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 5.1e-74 282.0 239 66.1
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 8.7e-74 281.2 236 66.9
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 4.3e-73 278.9 211 70.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.2e-72 276.6 273 56.8
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.8e-72 276.2 261 60.2
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.8e-72 276.2 225 69.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.7e-72 275.8 268 59.7
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.3e-72 275.0 268 59.7
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.4e-71 273.9 272 58.5
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.4e-71 273.1 266 59.0
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.5e-70 270.4 278 53.6
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.4e-70 269.2 271 59.0
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 7.7e-70 268.1 274 60.9
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 7.7e-70 268.1 221 65.2
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 7.7e-70 268.1 286 54.2
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.0e-69 267.7 289 52.9
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 3.8e-69 265.8 330 51.8
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.5e-69 265.0 259 56.4
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 8.5e-69 264.6 202 66.3
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 8.5e-69 264.6 258 62.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.4e-68 263.8 286 59.4
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.9e-68 263.5 210 63.8
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 5.5e-68 261.9 214 69.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 5.5e-68 261.9 288 53.5
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 5.5e-68 261.9 261 54.8
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.2e-67 260.8 222 65.8
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.7e-67 259.6 211 69.2
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 3.6e-67 259.2 263 58.6
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.6e-67 259.2 274 52.9
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 6.1e-67 258.5 274 52.9
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.0e-66 257.7 217 68.2
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.0e-66 257.7 268 57.1
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.0e-66 257.7 253 55.3
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.3e-66 256.5 268 56.7
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.0e-65 253.4 268 56.0
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.7e-64 250.4 287 51.9
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 2.4e-63 246.5 209 67.0
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 4.1e-63 245.7 283 56.5
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 4.1e-63 245.7 241 60.2
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.3e-61 240.7 180 68.3
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.2e-61 240.0 181 68.0
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.9e-61 239.6 251 57.8
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.4e-60 237.3 222 57.2
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.5e-60 236.5 180 71.1
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 7.2e-60 235.0 221 56.6
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.1e-59 233.4 221 57.9
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.6e-59 232.6 206 58.3
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.6e-59 232.6 206 58.3
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 6.1e-59 231.9 221 57.9
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.3e-58 229.9 277 52.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.9e-58 229.2 181 70.2
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 6.7e-58 228.4 210 56.2
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.5e-57 227.3 286 53.1
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 5.7e-57 225.3 226 54.4
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 9.7e-57 224.6 226 60.6
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.7e-57 224.6 224 57.6
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.3e-56 224.2 270 54.1
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.8e-56 223.0 271 53.9
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.6e-54 216.5 282 45.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.3e-53 214.2 194 60.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.7e-53 213.8 220 55.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.2e-53 213.4 266 49.2
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.1e-52 211.1 198 57.6
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 2.5e-52 209.9 221 52.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 7.2e-52 208.4 284 45.1
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 7.2e-52 208.4 284 45.1
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.2e-51 207.6 284 45.1
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-51 206.5 284 44.7
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.7e-51 206.5 285 44.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 8.0e-51 204.9 193 61.1
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 6.7e-50 201.8 216 54.6
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-49 201.1 225 56.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.5e-49 200.7 224 55.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 4.4e-49 199.1 213 51.2
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 5.7e-49 198.7 224 55.4
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 7.4e-49 198.4 226 54.9
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 3.7e-48 196.1 230 53.9
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.4e-47 193.4 155 58.7
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.6e-46 190.7 289 41.5
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.0e-45 188.0 160 64.4
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-45 187.2 169 59.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 5.0e-45 185.7 185 55.7
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.5e-44 183.3 204 52.0
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.2e-44 183.0 231 46.8
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 7.2e-44 181.8 168 53.0
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 4.7e-43 179.1 275 41.8
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.7e-43 179.1 142 68.3
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 4.7e-43 179.1 206 48.1
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.8e-42 175.3 182 53.3
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 4.4e-41 172.6 148 54.7
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.2e-40 170.2 252 42.9
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 3.7e-40 169.5 142 65.5
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.3e-40 168.3 208 49.0
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.7e-38 161.8 144 71.5
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.8e-37 159.5 132 58.3
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 6.5e-37 158.7 213 45.1
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-36 157.9 141 63.8
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.8e-34 150.6 273 37.4
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 4.0e-34 149.4 151 64.9
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 8.8e-34 148.3 159 54.1
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 5.7e-33 145.6 138 58.7
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.3e-32 144.4 125 56.0
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 8.3e-32 141.7 138 60.9
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.2e-30 137.9 228 39.0
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.0e-30 137.1 158 47.5
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.1e-28 131.3 156 54.5
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 6.8e-26 122.1 132 45.5
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.7e-25 119.0 154 57.8
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.7e-25 119.0 111 53.2
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.6e-22 110.9 131 45.8
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.0e-22 110.5 230 40.9
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.7e-22 110.2 97 50.5
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.5e-22 109.8 101 64.4
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 6.6e-21 105.5 97 63.9
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 6.6e-21 105.5 139 56.8
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.1e-20 104.8 207 40.1
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.9e-20 104.0 119 39.5
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.8e-19 100.1 89 65.2
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 3.6e-19 99.8 197 34.5
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 4.6e-14 82.8 107 50.5
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 3.9e-13 79.7 106 44.3
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.2e-10 69.3 53 56.6
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-08 64.7 96 42.7
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 8.3e-08 62.0 104 31.7
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.2e-07 60.1 84 42.9
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 4.1e-07 59.7 59 44.1
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 4.1e-07 59.7 84 38.1
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.6e-06 56.2 49 71.4
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 4.6e-06 56.2 49 71.4
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 6.0e-06 55.8 98 34.7
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 7.8e-06 55.5 93 39.8
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 7.8e-06 55.5 49 44.9


User provided reference genes

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