Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 1.8e-69 265.8 130 100.0
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 3.5e-65 251.5 130 95.4
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 6.8e-61 237.3 127 92.1
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 1.3e-59 233.0 122 91.0
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 4.8e-59 231.1 117 96.6
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 4.1e-58 228.0 133 87.2
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 5.9e-57 224.2 118 91.5
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 2.5e-55 218.8 123 89.4
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.0e-53 211.8 117 88.9
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 6.8e-53 210.7 117 83.8
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 2.0e-52 209.1 117 87.2
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 9.8e-52 206.8 117 88.0
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 9.8e-52 206.8 117 88.0
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 3.7e-51 204.9 117 82.9
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 4.9e-51 204.5 117 84.6
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 1.1e-50 203.4 117 82.1
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 1.4e-50 203.0 117 82.1
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.4e-50 203.0 117 82.1
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.8e-50 202.6 117 82.1
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 2.4e-50 202.2 118 79.7
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.2e-49 199.9 117 80.3
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.6e-49 199.5 117 82.1
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 2.0e-49 199.1 120 81.7
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 2.7e-49 198.7 117 82.1
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.5e-49 198.4 119 79.0
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 3.5e-49 198.4 122 81.1
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 4.5e-49 198.0 118 78.8
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 1.0e-48 196.8 117 80.3
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.3e-48 196.4 122 79.5
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.3e-48 195.7 119 79.8
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.9e-48 194.9 117 80.3
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.9e-48 194.9 121 75.2
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.9e-47 192.6 118 79.7
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 1.9e-47 192.6 117 81.2
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.3e-47 191.8 117 78.6
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 4.3e-47 191.4 119 76.5
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 7.3e-47 190.7 125 73.6
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 9.5e-47 190.3 117 79.5
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 1.6e-46 189.5 117 77.8
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 1.6e-46 189.5 117 78.6
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 2.1e-46 189.1 120 78.3
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 2.1e-46 189.1 118 77.1
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 3.6e-46 188.3 119 73.9
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 4.7e-46 188.0 117 74.4
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 6.1e-46 187.6 118 77.1
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 8.0e-46 187.2 120 75.8
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 1.0e-45 186.8 117 77.8
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 1.4e-45 186.4 119 76.5
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.4e-45 186.4 119 77.3
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.4e-45 186.4 118 77.1
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 1.8e-45 186.0 119 73.9
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.8e-45 186.0 120 75.0
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 2.3e-45 185.7 117 78.6
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 2.3e-45 185.7 118 77.1
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 4.0e-45 184.9 118 77.1
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 5.2e-45 184.5 121 74.4
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 3.4e-44 181.8 118 75.4
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 3.4e-44 181.8 119 75.6
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 4.4e-44 181.4 118 76.3
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 4.4e-44 181.4 118 76.3
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 7.5e-44 180.6 121 75.2
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 9.8e-44 180.3 123 71.5
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 9.8e-44 180.3 122 74.6
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.3e-43 179.9 119 72.3
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 1.3e-43 179.9 119 74.8
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.3e-43 179.9 117 75.2
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 1.7e-43 179.5 119 73.1
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 2.2e-43 179.1 119 74.8
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.2e-43 179.1 119 72.3
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 2.9e-43 178.7 119 74.8
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 3.7e-43 178.3 120 73.3
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 4.9e-43 177.9 121 75.2
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 4.9e-43 177.9 118 73.7
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 4.9e-43 177.9 122 73.0
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 6.4e-43 177.6 119 72.3
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 6.4e-43 177.6 117 72.6
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-42 176.8 85 97.6
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 1.4e-42 176.4 117 71.8
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 1.9e-42 176.0 117 72.6
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.9e-42 176.0 118 72.9
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 2.4e-42 175.6 116 69.8
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 3.2e-42 175.3 120 71.7
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 3.2e-42 175.3 119 73.9
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 4.1e-42 174.9 121 71.1
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 4.1e-42 174.9 117 72.6
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 4.1e-42 174.9 121 70.2
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 4.1e-42 174.9 119 72.3
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 5.4e-42 174.5 120 71.7
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 5.4e-42 174.5 119 72.3
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 5.4e-42 174.5 114 76.3
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 7.0e-42 174.1 117 70.9
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 9.2e-42 173.7 120 71.7
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 1.6e-41 172.9 120 70.8
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 1.6e-41 172.9 120 70.8
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 1.6e-41 172.9 120 70.8
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 2.0e-41 172.6 120 70.0
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 2.0e-41 172.6 121 69.4
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 2.0e-41 172.6 120 71.7
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 2.0e-41 172.6 117 71.8
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 2.7e-41 172.2 120 71.7
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 2.7e-41 172.2 120 71.7
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 2.7e-41 172.2 120 71.7
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 3.5e-41 171.8 121 69.4
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 3.5e-41 171.8 120 70.0
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 3.5e-41 171.8 118 72.0
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 6.0e-41 171.0 120 71.7
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 7.8e-41 170.6 106 77.4
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 1.0e-40 170.2 118 71.2
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.0e-40 170.2 119 68.9
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 2.3e-40 169.1 120 68.3
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 3.0e-40 168.7 119 71.4
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 6.6e-40 167.5 125 69.6
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 6.6e-40 167.5 125 69.6
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 6.6e-40 167.5 88 86.4
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.1e-39 166.8 120 69.2
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.5e-39 166.4 119 68.9
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.5e-39 166.4 119 68.9
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.5e-39 166.4 123 67.5
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.5e-39 166.4 123 67.5
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.5e-39 166.4 123 67.5
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 1.5e-39 166.4 121 68.6
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 2.5e-39 165.6 85 89.4
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 2.5e-39 165.6 122 67.2
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 2.5e-39 165.6 122 67.2
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 2.5e-39 165.6 122 67.2
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 4.3e-39 164.9 123 69.9
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 7.3e-39 164.1 96 78.1
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 7.3e-39 164.1 123 65.9
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 9.5e-39 163.7 120 67.5
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 1.2e-38 163.3 87 83.9
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 1.6e-38 162.9 125 66.4
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.6e-38 162.9 126 65.1
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 1.6e-38 162.9 123 69.1
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 4.7e-38 161.4 86 84.9
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 8.0e-38 160.6 120 66.7
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.1e-37 160.2 86 83.7
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 1.1e-37 160.2 84 85.7
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 1.7e-35 152.9 85 80.0
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 1.7e-35 152.9 143 60.1
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 2.2e-35 152.5 113 67.3
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 2.9e-35 152.1 88 76.1
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 3.7e-35 151.8 121 62.0
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 3.7e-35 151.8 121 62.0
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 4.9e-35 151.4 121 62.0
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 4.9e-35 151.4 121 62.0
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 2.4e-34 149.1 123 63.4
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 2.4e-34 149.1 88 72.7
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 3.2e-34 148.7 80 88.8
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 7.0e-34 147.5 102 66.7
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 7.0e-34 147.5 75 89.3
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 2.1e-33 146.0 113 65.5
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 6.0e-33 144.4 75 84.0
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 1.0e-32 143.7 75 86.7
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.0e-32 143.7 87 72.4
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.7e-32 142.9 116 62.1
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 3.0e-32 142.1 118 58.5
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 5.1e-32 141.4 81 80.2
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 8.6e-32 140.6 115 58.3
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 1.9e-31 139.4 119 54.6
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 4.0e-29 131.7 85 71.8
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 6.8e-29 131.0 94 64.9
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 8.9e-29 130.6 118 57.6
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 7.8e-25 117.5 155 45.8
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 9.5e-23 110.5 80 67.5
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 8.9e-21 104.0 94 55.3
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.5e-20 103.2 87 57.5
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 2.9e-19 99.0 90 52.2
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 5.4e-18 94.7 102 46.1
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 9.2e-18 94.0 85 52.9
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 9.2e-18 94.0 72 65.3
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 2.7e-17 92.4 91 42.9
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 3.2e-10 68.9 62 51.6
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 3.3e-07 58.9 37 70.3
SHI20750 Sapria himalayana HOM05D003659 ORTHO05D004298 5.6e-07 58.2 48 58.3
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 1.3e-06 57.0 121 33.1


User provided reference genes

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