Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 4.0e-196 688.0 360 100.0
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 3.3e-81 306.2 361 48.2
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 1.1e-73 281.2 326 48.5
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 2.5e-73 280.0 360 45.8
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 3.3e-73 279.6 359 45.7
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 1.3e-72 277.7 315 50.5
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 1.4e-71 274.2 361 46.0
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 5.3e-71 272.3 344 46.2
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.5e-70 270.8 360 44.2
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 3.4e-70 269.6 358 44.7
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 4.4e-70 269.2 344 46.2
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 9.9e-70 268.1 360 44.2
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 9.9e-70 268.1 354 44.6
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 1.3e-69 267.7 353 45.6
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 2.9e-69 266.5 360 43.9
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 6.4e-69 265.4 351 44.2
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 1.4e-68 264.2 351 43.6
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.4e-68 264.2 367 43.9
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 2.4e-68 263.5 351 44.2
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 3.2e-68 263.1 357 44.5
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 1.2e-67 261.2 318 47.2
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.6e-67 259.2 366 44.0
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 7.3e-65 251.9 349 45.8
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 1.3e-64 251.1 372 43.0
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 1.1e-63 248.1 357 40.6
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 3.1e-63 246.5 360 44.7
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 6.9e-63 245.4 357 42.9
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 3.4e-62 243.0 372 42.7
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 4.9e-61 239.2 357 38.7
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 1.4e-60 237.7 349 41.3
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 2.4e-60 236.9 326 43.3
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 7.1e-60 235.3 326 42.9
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 2.1e-59 233.8 374 39.0
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 2.7e-59 233.4 326 42.6
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 3.5e-59 233.0 364 41.5
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 7.9e-59 231.9 345 41.4
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 7.9e-59 231.9 348 43.4
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 1.3e-58 231.1 343 41.7
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 1.3e-58 231.1 357 39.8
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 1.8e-58 230.7 344 42.2
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 8.7e-58 228.4 354 40.4
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 1.1e-57 228.0 342 40.6
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 2.5e-57 226.9 360 42.5
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 3.3e-57 226.5 353 42.2
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 3.3e-57 226.5 331 44.1
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 3.3e-57 226.5 372 41.1
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 2.1e-56 223.8 358 38.5
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 3.7e-56 223.0 357 38.9
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 5.3e-55 219.2 354 39.0
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 6.9e-55 218.8 316 44.3
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 2.0e-54 217.2 362 39.2
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 2.2e-53 213.8 322 41.9
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 1.9e-52 210.7 358 39.7
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 2.1e-51 207.2 356 38.5
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 2.7e-51 206.8 318 41.8
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 3.9e-50 203.0 262 47.3
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 8.7e-50 201.8 325 40.3
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 1.9e-49 200.7 333 39.6
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 3.3e-49 199.9 347 38.0
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 1.3e-48 198.0 355 38.3
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 1.6e-48 197.6 313 39.0
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 2.1e-48 197.2 320 39.7
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 1.8e-47 194.1 346 40.2
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 1.8e-47 194.1 269 46.5
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 4.1e-47 193.0 323 38.7
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 1.7e-45 187.6 322 37.6
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 4.6e-43 179.5 272 44.5
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 1.0e-42 178.3 266 45.1
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 1.0e-42 178.3 352 37.5
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 1.8e-42 177.6 305 39.3
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 1.8e-42 177.6 300 37.3
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 4.1e-39 166.4 265 41.1
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 1.7e-37 161.0 343 37.3
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 1.7e-37 161.0 343 37.3
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 3.8e-37 159.8 340 37.9
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 7.2e-36 155.6 248 39.1
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 3.6e-35 153.3 284 38.0
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 8.8e-34 148.7 333 35.1
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 8.8e-34 148.7 347 34.3
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.0e-33 147.5 347 34.3
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 2.2e-32 144.1 344 32.8
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 1.4e-31 141.4 359 32.9
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 5.3e-31 139.4 296 37.2
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 2.0e-30 137.5 216 41.7
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 2.0e-30 137.5 202 47.5
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 1.0e-29 135.2 272 35.3
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 2.2e-29 134.0 171 43.9
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 5.0e-29 132.9 360 32.2
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 6.5e-29 132.5 374 30.7
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 4.7e-27 126.3 214 41.6
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 3.0e-26 123.6 349 31.2
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 8.8e-26 122.1 357 30.3
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 1.5e-25 121.3 337 32.3
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 1.3e-24 118.2 348 31.0
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 3.1e-23 113.6 350 30.0
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 3.1e-23 113.6 349 29.8
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 9.1e-23 112.1 336 29.8
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 9.1e-23 112.1 336 29.8
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 2.0e-22 110.9 336 29.5
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 2.9e-21 107.1 281 31.0
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 2.5e-20 104.0 349 28.9
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 5.5e-20 102.8 242 31.8
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 1.6e-19 101.3 108 49.1
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 2.3e-18 97.4 151 38.4
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 2.3e-18 97.4 151 38.4
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 1.5e-17 94.7 273 29.7
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 2.8e-16 90.5 285 28.8
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 3.7e-16 90.1 275 29.5
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 1.8e-15 87.8 292 28.1
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 4.1e-15 86.7 320 27.5
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 5.3e-15 86.3 270 25.6
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 9.1e-15 85.5 314 27.1
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 2.3e-10 70.9 82 42.7
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 4.0e-10 70.1 92 38.0
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 1.3e-08 65.1 291 25.1
MD16G1286500 Malus domestica HOM05D006619 ORTHO05D008351 4.8e-08 63.2 133 32.3


User provided reference genes

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