Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 0.0e+00 1367.4 697 100.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1146.3 698 83.4
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 0.0e+00 1126.3 697 82.2
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 0.0e+00 1125.9 692 82.5
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 0.0e+00 1117.8 740 77.6
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 0.0e+00 1111.7 697 80.8
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1110.9 695 81.3
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 0.0e+00 1109.4 692 80.8
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 0.0e+00 1109.0 692 80.8
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1105.9 697 80.1
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 0.0e+00 1104.4 697 80.3
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1102.8 742 77.4
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 0.0e+00 1100.5 692 80.3
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1097.4 700 80.0
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1095.1 695 80.7
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1094.3 695 79.7
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1093.6 698 80.2
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1090.5 697 79.9
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1088.2 698 80.2
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 0.0e+00 1085.1 697 79.5
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1084.7 697 79.6
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 0.0e+00 1081.2 693 78.6
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1079.7 694 79.0
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1078.2 691 78.7
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1078.2 694 79.0
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1077.8 691 78.7
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1076.2 691 78.9
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 4.8e-312 1074.7 696 78.9
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 2.4e-311 1071.6 696 78.2
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 5.7e-311 1070.5 693 78.4
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 9.5e-311 1069.7 697 78.2
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 9.5e-311 1069.7 693 77.6
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.6e-310 1068.9 692 79.3
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 2.8e-310 1068.1 696 79.3
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 3.6e-310 1067.8 733 76.4
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 2.3e-309 1065.1 693 78.5
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 3.1e-309 1064.7 697 77.6
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 2.0e-308 1062.0 695 78.4
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 2.0e-308 1062.0 695 78.8
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 4.4e-308 1060.8 695 78.6
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 5.8e-308 1060.4 697 77.3
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 9.8e-308 1059.7 695 78.0
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 3.7e-307 1057.7 692 78.6
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 4.9e-307 1057.4 803 69.2
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 1.1e-306 1056.2 698 77.4
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 2.4e-306 1055.0 695 78.1
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 695 77.7
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 719 74.4
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 698 77.1
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.3e-304 1049.3 691 77.1
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 5.0e-304 1047.3 699 77.4
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.0e-304 1047.3 691 77.1
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 7.3e-303 1043.5 694 77.7
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 9.5e-303 1043.1 695 77.4
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 6.2e-302 1040.4 713 76.2
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.2e-300 1036.2 696 76.6
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 1.5e-300 1035.8 678 78.3
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 3.4e-300 1034.6 698 76.2
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 7.5e-300 1033.5 697 76.3
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.9e-298 1028.9 696 75.4
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.9e-298 1028.9 695 76.4
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 1.2e-297 1026.2 698 76.4
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 3.5e-297 1024.6 696 75.6
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 4.6e-297 1024.2 695 75.8
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.7e-296 1022.3 699 75.0
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 8.6e-296 1020.0 697 75.2
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 2.3e-293 1011.9 649 79.7
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 6.8e-293 1010.4 694 75.1
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.2e-292 1009.6 698 74.9
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.5e-292 1009.2 698 74.6
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 9.9e-292 1006.5 698 74.9
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 5.4e-290 1000.7 698 73.9
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 3.5e-289 998.0 697 73.9
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 5.1e-288 994.2 695 74.5
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 5.1e-288 994.2 698 73.9
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 6.6e-288 993.8 698 73.6
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 6.6e-288 993.8 698 73.6
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 2.5e-287 991.9 698 73.5
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 2.5e-287 991.9 698 73.5
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 4.3e-287 991.1 694 73.2
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 4.3e-287 991.1 698 73.6
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 9.6e-287 989.9 699 73.8
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 7.6e-284 980.3 698 72.6
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 8.1e-270 933.7 700 68.6
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.8e-269 932.6 555 84.9
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 5.3e-269 931.0 782 64.7
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.0e-264 916.8 1203 47.6
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 7.4e-263 910.6 691 68.0
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.4e-261 906.4 691 68.5
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 2.3e-248 862.4 717 63.5
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.8e-245 852.8 570 76.1
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 7.7e-236 820.8 725 58.2
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 6.1e-233 811.2 511 79.5
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 8.2e-230 800.8 513 79.5
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.1e-217 759.6 469 81.2
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 9.8e-215 750.7 643 60.5
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 2.2e-214 749.6 520 73.5
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.2e-212 743.8 704 58.0
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 3.3e-194 682.6 417 81.8
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.8e-144 517.3 712 42.3
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 5.3e-144 515.8 713 42.6
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 1.5e-138 497.7 717 41.3
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.1e-137 493.8 698 45.8
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.1e-132 475.7 698 45.4
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 3.7e-129 466.5 443 61.2
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 4.5e-127 459.5 270 87.4
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 4.4e-122 443.0 274 83.2
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.7e-119 432.2 665 44.2
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.8e-112 411.0 476 48.1
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.9e-109 401.0 232 85.8
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.2e-90 338.6 249 69.5
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.8e-88 331.3 681 35.8
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 3.5e-79 300.4 295 59.3
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 4.6e-79 300.1 224 67.9
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 2.1e-68 264.6 199 72.4
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 7.8e-63 246.1 167 71.9
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 3.9e-46 190.7 140 73.6
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 3.9e-46 190.7 140 73.6
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 1.6e-39 168.7 101 82.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 6.2e-36 156.8 122 71.3
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.9e-29 135.2 118 57.6
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 2.2e-25 121.7 84 70.2
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 7.9e-23 113.2 206 39.3
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 5.9e-18 97.1 73 69.9
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.4e-16 92.4 154 37.7
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 2.5e-16 91.7 64 76.6


User provided reference genes

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