Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.5e-109 398.7 186 100.0
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.6e-63 246.5 151 76.2
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 1.4e-51 206.8 191 55.5
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 2.4e-27 126.3 144 45.8
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 3.5e-26 122.5 136 47.1
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 7.7e-26 121.3 138 45.7
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.3e-25 120.6 134 45.5
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 1.7e-25 120.2 151 41.1
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.7e-25 120.2 141 44.7
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.7e-25 120.2 141 44.7
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 6.6e-25 118.2 145 42.8
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 6.6e-25 118.2 139 44.6
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 8.6e-25 117.9 139 44.6
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 7.2e-24 114.8 167 38.9
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 2.1e-23 113.2 139 41.7
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.6e-23 112.5 144 45.1
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 4.7e-23 112.1 118 44.1
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 6.1e-23 111.7 125 47.2
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 8.0e-23 111.3 145 40.7
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.0e-22 110.9 160 38.8
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.8e-22 110.2 180 37.2
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.8e-22 110.2 148 43.2
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.3e-22 109.8 123 45.5
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.0e-22 109.4 130 45.4
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.0e-22 109.4 161 39.8
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 3.0e-22 109.4 124 46.8
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 4.0e-22 109.0 129 46.5
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 4.0e-22 109.0 129 46.5
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 5.2e-22 108.6 124 46.0
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 5.2e-22 108.6 148 40.5
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.2e-22 108.6 127 45.7
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 6.8e-22 108.2 160 40.6
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 8.9e-22 107.8 123 44.7
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.2e-21 107.5 123 44.7
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 1.2e-21 107.5 150 42.0
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.5e-21 107.1 119 44.5
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-21 107.1 123 43.9
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 3.4e-21 105.9 123 43.9
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 3.4e-21 105.9 157 38.2
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 3.4e-21 105.9 145 42.1
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 5.7e-21 105.1 119 46.2
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 9.8e-21 104.4 143 44.8
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 9.8e-21 104.4 129 45.7
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 9.8e-21 104.4 129 45.7
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.7e-20 103.6 121 43.0
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.7e-20 103.6 121 43.0
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.2e-20 103.2 144 39.6
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.2e-20 103.2 144 39.6
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 3.7e-20 102.4 148 38.5
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 4.9e-20 102.1 119 41.2
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 4.9e-20 102.1 115 44.3
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 6.3e-20 101.7 121 43.0
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.1e-19 100.9 116 42.2
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.1e-19 100.9 115 45.2
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.4e-19 100.5 116 41.4
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 1.4e-19 100.5 119 42.0
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.8e-19 100.1 120 42.5
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 1.8e-19 100.1 150 39.3
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.4e-19 99.8 120 45.8
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 2.4e-19 99.8 139 41.7
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.4e-19 99.8 142 42.3
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.1e-19 99.0 142 42.3
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 5.4e-19 98.6 118 42.4
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 7.0e-19 98.2 148 37.8
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 9.2e-19 97.8 112 44.6
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 9.2e-19 97.8 103 46.6
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.2e-18 97.4 120 38.3
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.6e-18 97.1 118 43.2
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.5e-18 95.5 145 39.3
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 5.9e-18 95.1 121 41.3
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 5.0e-17 92.0 121 41.3
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.0e-17 92.0 116 41.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.6e-17 91.7 116 41.4
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 6.6e-17 91.7 124 46.0
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 6.6e-17 91.7 101 42.6
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.1e-16 90.9 141 38.3
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.5e-16 90.5 102 51.0
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.5e-16 90.5 122 40.2
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.5e-16 90.5 115 40.9
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.5e-16 90.5 128 39.1
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 1.5e-16 90.5 127 43.3
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.5e-16 90.5 142 35.9
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.9e-16 90.1 117 39.3
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.5e-16 89.7 108 42.6
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 3.3e-16 89.4 121 38.0
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 5.6e-16 88.6 99 44.4
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.2e-15 87.4 141 36.9
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.6e-15 85.9 98 45.9
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 3.6e-15 85.9 111 45.0
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 4.7e-15 85.5 100 44.0
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.1e-15 85.1 103 39.8
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 6.1e-15 85.1 147 36.1
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 1.8e-14 83.6 146 38.4
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 2.3e-14 83.2 119 38.7
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 3.1e-14 82.8 135 37.8
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 6.8e-14 81.6 110 40.0
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 8.9e-14 81.3 134 36.6
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 8.9e-14 81.3 110 40.9
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.5e-13 80.5 124 37.1
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 1.5e-13 80.5 125 37.6
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.6e-13 79.7 93 46.2
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 3.4e-13 79.3 114 38.6
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 4.4e-13 79.0 75 48.0
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.4e-13 79.0 136 32.4
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 5.8e-13 78.6 105 41.0
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 7.5e-13 78.2 100 37.0
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 9.8e-13 77.8 84 47.6
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.2e-12 76.6 139 33.8
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 3.7e-12 75.9 120 34.2
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 4.9e-12 75.5 106 35.8
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.4e-12 75.1 103 41.7
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.4e-12 75.1 128 30.5
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.4e-11 73.9 82 46.3
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 1.4e-11 73.9 94 45.7
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 5.4e-11 72.0 120 36.7
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 5.4e-11 72.0 118 36.4
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 7.0e-11 71.6 77 46.8
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 9.2e-11 71.2 116 37.1
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.5e-10 69.3 108 38.9
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.6e-10 68.9 125 37.6
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.0e-09 67.8 109 37.6
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.0e-09 66.2 108 37.0
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.0e-09 65.5 108 37.0
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.6e-09 65.1 82 41.5
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 6.6e-09 65.1 84 39.3
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 8.6e-09 64.7 97 43.3
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 1.5e-08 63.9 73 43.8
Eucgr.H02901 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.5e-08 63.9 106 34.9
CiPaw.01G027200 Carya illinoinensis HOM05D000395 ORTHO05D000088 5.6e-08 62.0 130 33.8
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 1.2e-07 60.8 97 34.0
COL.COLO4_26809 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.6e-07 60.5 100 37.0
Lalb_Chr19g0126241 Lupinus albus HOM05D000395 ORTHO05D000088 1.6e-07 60.5 125 32.0
FAN26G3456 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.1e-07 60.1 156 29.5
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 2.1e-07 60.1 171 29.2
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 2.1e-07 60.1 85 34.1
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.6e-07 59.3 113 37.2
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.7e-07 58.9 58 50.0
CiPaw.01G027100 Carya illinoinensis HOM05D000395 ORTHO05D000088 6.2e-07 58.5 130 33.1
PSO384G3645 Papaver somniferum HOM05D000395 ORTHO05D000088 8.0e-07 58.2 129 31.0
CANSAT54G1365 Cannabis sativa HOM05D000838 ORTHO05D000656 1.1e-06 57.8 105 33.3
CAN.G181.26 Capsicum annuum HOM05D000838 ORTHO05D000656 1.1e-06 57.8 98 35.7
LjContig00141g0023563 Lotus japonicus HOM05D000838 ORTHO05D000656 1.1e-06 57.8 152 30.9
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 1.4e-06 57.4 71 36.6
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 1.8e-06 57.0 94 35.1
Solyc06g007530.2 Solanum lycopersicum HOM05D000838 ORTHO05D000656 1.8e-06 57.0 99 34.3
Sopen06g002440 Solanum pennellii HOM05D000838 ORTHO05D000656 1.8e-06 57.0 99 34.3
AUR62017521 Chenopodium quinoa HOM05D000395 ORTHO05D000088 2.3e-06 56.6 102 36.3
Lj2A564T41 Lonicera japonica HOM05D000395 ORTHO05D000088 2.3e-06 56.6 125 33.6
Sed0026120 Sechium edule HOM05D000395 ORTHO05D000088 2.3e-06 56.6 98 34.7
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.3e-06 56.6 101 35.6
SEGI_37905 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.3e-06 56.6 108 33.3
SGA_v2.0_scaffold15G07217 Striga asiatica HOM05D000395 ORTHO05D000088 2.3e-06 56.6 131 29.8
ClCG02G013120 Citrullus lanatus HOM05D000395 ORTHO05D000088 4.0e-06 55.8 106 33.0
ClCG09G017680 Citrullus lanatus HOM05D000395 ORTHO05D000088 4.0e-06 55.8 100 31.0
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 4.0e-06 55.8 100 34.0
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.0e-06 55.8 100 34.0
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.0e-06 55.8 100 33.0
RcHm_v2.0_Chr2g0118951 Rosa chinensis HOM05D000395 ORTHO05D000088 4.0e-06 55.8 155 27.1
TWI09G0601 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.0e-06 55.8 104 33.7
Nn7g36387 Nelumbo nucifera HOM05D000823 ORTHO05D000088 5.2e-06 55.5 85 37.6
Pp3c17_12880 Physcomitrium patens HOM05D027854 ORTHO05D000088 5.2e-06 55.5 112 33.0
Pp3c22_2550 Physcomitrium patens HOM05D000838 ORTHO05D000656 5.2e-06 55.5 149 27.5
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 6.8e-06 55.1 83 38.6
SEGI_02416 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 6.8e-06 55.1 100 31.0
Actinidia23830 Actinidia chinensis HOM05D000838 ORTHO05D000656 8.9e-06 54.7 99 34.3
PSO339G0204 Papaver somniferum HOM05D000395 ORTHO05D000088 8.9e-06 54.7 115 30.4
PGSC0003DMG400020648 Solanum tuberosum HOM05D000838 ORTHO05D000656 8.9e-06 54.7 98 33.7
Thecc.01G046600 Theobroma cacao HOM05D000823 ORTHO05D000088 8.9e-06 54.7 106 32.1


User provided reference genes

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