Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05530 Coffea canephora HOM05D000558 ORTHO05D006060 2.0e-71 272.3 139 100.0
Cc06_g22730 Coffea canephora HOM05D000558 ORTHO05D006060 9.8e-42 173.7 98 89.8
CAN.G245.6 Capsicum annuum HOM05D000558 ORTHO05D006060 2.1e-28 129.4 95 67.4
Nitab4.5_0000721g0170 Nicotiana tabacum HOM05D000558 ORTHO05D006060 1.2e-26 123.6 95 64.2
Nitab4.5_0001918g0070 Nicotiana tabacum HOM05D000558 ORTHO05D006060 1.2e-26 123.6 95 64.2
Sopen01g025410 Solanum pennellii HOM05D000558 ORTHO05D006060 2.0e-26 122.9 95 64.2
SGA_v2.0_scaffold66G22317 Striga asiatica HOM05D000558 ORTHO05D006060 2.6e-26 122.5 97 59.8
Peaxi162Scf00168g00310 Petunia axillaris HOM05D000558 ORTHO05D006060 2.2e-25 119.4 89 64.0
Oeu060749.1 Olea europaea HOM05D000558 ORTHO05D006060 3.7e-25 118.6 98 62.2
Migut.J01566 Erythranthe guttata HOM05D000558 ORTHO05D006060 6.4e-25 117.9 97 56.7
MSTRG.10770 Avicennia marina HOM05D000558 ORTHO05D006060 9.2e-24 114.0 98 58.2
HanXRQChr10g0291951 Helianthus annuus HOM05D000558 ORTHO05D006060 4.6e-23 111.7 116 49.1
FvH4_1g24870 Fragaria vesca HOM05D000558 ORTHO05D006060 7.8e-23 110.9 95 57.9
FAN19G1330 Fragaria x ananassa HOM05D000558 ORTHO05D006060 7.8e-23 110.9 95 57.9
FAN28G1493 Fragaria x ananassa HOM05D000558 ORTHO05D006060 1.7e-22 109.8 95 56.8
Prupe.7G020600 Prunus persica HOM05D000558 ORTHO05D006060 1.7e-22 109.8 95 56.8
CiPaw.09G162700 Carya illinoinensis HOM05D000558 ORTHO05D006060 3.9e-22 108.6 94 58.5
RcHm_v2.0_Chr2g0122531 Rosa chinensis HOM05D000558 ORTHO05D006060 3.9e-22 108.6 95 61.1
Potri.016G024900 Populus trichocarpa HOM05D000558 ORTHO05D006060 5.1e-22 108.2 98 58.2
TWI77G0858 Tripterygium wilfordii HOM05D000558 ORTHO05D006060 5.1e-22 108.2 92 62.0
Manes.09G074219 Manihot esculenta HOM05D000558 ORTHO05D006060 8.6e-22 107.5 94 59.6
Dinv11641 Davidia involucrata HOM05D000558 ORTHO05D006060 2.5e-21 105.9 92 56.5
MD02G1144000 Malus domestica HOM05D000558 ORTHO05D006060 2.5e-21 105.9 95 57.9
CANSAT78G0694 Cannabis sativa HOM05D000558 ORTHO05D006060 3.3e-21 105.5 93 57.0
Sabra16G0030800 Salix brachista HOM05D000558 ORTHO05D006060 3.3e-21 105.5 98 56.1
CSS0006527 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 4.3e-21 105.1 97 53.6
FAN23G1409 Fragaria x ananassa HOM05D000558 ORTHO05D006060 4.3e-21 105.1 95 54.7
Lj1g0006192 Lotus japonicus HOM05D000558 ORTHO05D006060 4.3e-21 105.1 95 56.8
CSS0034662 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 7.3e-21 104.4 97 52.6
Rhsim02G0221000 Rhododendron simsii HOM05D000558 ORTHO05D006060 7.3e-21 104.4 97 55.7
Cpa.g.sc92.56 Carica papaya HOM05D000558 ORTHO05D006060 9.6e-21 104.0 95 52.6
MELO3C009719.2 Cucumis melo HOM05D000558 ORTHO05D006060 9.6e-21 104.0 92 55.4
Lsat_1_v5_gn_9_30301 Lactuca sativa HOM05D000558 ORTHO05D006060 9.6e-21 104.0 92 54.3
MD15G1257400 Malus domestica HOM05D000558 ORTHO05D006060 9.6e-21 104.0 94 57.4
Lalb_Chr14g0365291 Lupinus albus HOM05D000558 ORTHO05D006060 1.2e-20 103.6 95 55.8
Thecc.05G129900 Theobroma cacao HOM05D000558 ORTHO05D006060 1.6e-20 103.2 95 55.8
Cfa019914 Carpinus fangiana HOM05D000558 ORTHO05D006060 2.1e-20 102.8 93 57.0
Duzib128G0051 Durio zibethinus HOM05D000558 ORTHO05D006060 2.1e-20 102.8 101 55.4
vmacro11286 Vaccinium macrocarpon HOM05D000558 ORTHO05D006060 2.1e-20 102.8 97 53.6
unitig_899.g15653 Utricularia gibba HOM05D000558 ORTHO05D006060 2.8e-20 102.4 82 61.0
Ciclev10012628m.g Citrus clementina HOM05D000558 ORTHO05D006060 6.2e-20 101.3 94 55.3
Haze_20336 Corylus avellana HOM05D000558 ORTHO05D006060 6.2e-20 101.3 91 57.1
Lj1A1078G61 Lonicera japonica HOM05D000558 ORTHO05D006060 8.1e-20 100.9 94 57.4
QL07p015203 Quercus lobata HOM05D000558 ORTHO05D006060 8.1e-20 100.9 93 53.8
CiPaw.10G122600 Carya illinoinensis HOM05D000558 ORTHO05D006060 1.1e-19 100.5 94 54.3
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 1.1e-19 100.5 91 54.9
Thhalv10006214m.g Eutrema salsugineum HOM05D000558 ORTHO05D006060 1.1e-19 100.5 95 49.5
Migut.K00175 Erythranthe guttata HOM05D000558 ORTHO05D006060 1.4e-19 100.1 111 47.7
Aa31LG10G11870 Aethionema arabicum HOM05D000558 ORTHO05D006060 1.8e-19 99.8 95 48.4
TAR546G0003 Trochodendron aralioides HOM05D000558 ORTHO05D006060 1.8e-19 99.8 94 55.3
Dinv11640 Davidia involucrata HOM05D000558 ORTHO05D006060 2.4e-19 99.4 93 53.8
C06p23880 Brassica napus HOM05D000558 ORTHO05D006060 3.1e-19 99.0 95 47.4
Actinidia06449 Actinidia chinensis HOM05D000558 ORTHO05D006060 4.0e-19 98.6 94 53.2
BcaC08g44812 Brassica carinata HOM05D000558 ORTHO05D006060 4.0e-19 98.6 95 47.4
BolC6t37556H Brassica oleracea HOM05D000558 ORTHO05D006060 4.0e-19 98.6 95 47.4
A07p23160 Brassica napus HOM05D000558 ORTHO05D006060 5.2e-19 98.2 95 46.3
BraA07t29977Z Brassica rapa HOM05D000558 ORTHO05D006060 5.2e-19 98.2 95 46.3
ClCG10G016560 Citrullus lanatus HOM05D000558 ORTHO05D006060 5.2e-19 98.2 92 54.3
Eucgr.A02176 Eucalyptus grandis HOM05D000558 ORTHO05D006060 5.2e-19 98.2 91 57.1
Hma1.2p1_0221F.1_g093060 Hydrangea macrophylla HOM05D000558 ORTHO05D006060 5.2e-19 98.2 92 56.5
Sp5g05640 Schrenkiella parvula HOM05D000558 ORTHO05D006060 5.2e-19 98.2 95 46.3
Potri.006G027200 Populus trichocarpa HOM05D000558 ORTHO05D006060 6.8e-19 97.8 98 46.9
PGR042G3619 Punica granatum HOM05D000558 ORTHO05D006060 6.8e-19 97.8 98 53.1
BcaB02g07633 Brassica carinata HOM05D000558 ORTHO05D006060 8.9e-19 97.4 95 47.4
AL5G38380 Arabidopsis lyrata HOM05D000558 ORTHO05D006060 2.6e-18 95.9 95 45.3
AT3G56950 Arabidopsis thaliana HOM05D000558 ORTHO05D006060 3.4e-18 95.5 95 44.2
Sed0009539 Sechium edule HOM05D000558 ORTHO05D006060 3.4e-18 95.5 92 54.3
GSVIVG01025840001 Vitis vinifera HOM05D000558 ORTHO05D006060 3.4e-18 95.5 95 50.5
AUR62018444 Chenopodium quinoa HOM05D000558 ORTHO05D006060 4.4e-18 95.1 96 53.1
Glyma.03G119300 Glycine max HOM05D000558 ORTHO05D006060 4.4e-18 95.1 95 51.6
PSO339G1095 Papaver somniferum HOM05D000558 ORTHO05D006060 4.4e-18 95.1 95 52.6
Ah.04g150180 Amaranthus hybridus HOM05D000558 ORTHO05D006060 5.8e-18 94.7 98 53.1
Ah.04g150160 Amaranthus hybridus HOM05D000558 ORTHO05D006060 7.6e-18 94.4 97 53.6
BcaB02g08341 Brassica carinata HOM05D000558 ORTHO05D006060 7.6e-18 94.4 95 45.3
VMungo1383G1708 Vigna mungo HOM05D000558 ORTHO05D006060 7.6e-18 94.4 95 50.5
BcaC02g09880 Brassica carinata HOM05D000558 ORTHO05D006060 9.9e-18 94.0 95 44.2
A04p03630 Brassica napus HOM05D000558 ORTHO05D006060 9.9e-18 94.0 95 44.2
C04p35610 Brassica napus HOM05D000558 ORTHO05D006060 9.9e-18 94.0 95 44.2
BolC4t25243H Brassica oleracea HOM05D000558 ORTHO05D006060 9.9e-18 94.0 95 44.2
BraA04t16072Z Brassica rapa HOM05D000558 ORTHO05D006060 9.9e-18 94.0 95 44.2
Gorai.009G445300 Gossypium raimondii HOM05D000558 ORTHO05D006060 9.9e-18 94.0 118 48.3
CARHR167100 Cardamine hirsuta HOM05D000558 ORTHO05D006060 1.3e-17 93.6 95 44.2
AUR62020989 Chenopodium quinoa HOM05D000558 ORTHO05D006060 1.3e-17 93.6 96 52.1
Carub.0005s2369 Capsella rubella HOM05D000558 ORTHO05D006060 1.7e-17 93.2 95 43.2
Gohir.D05G377500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 1.7e-17 93.2 118 48.3
Glyma.19G123600 Glycine max HOM05D000558 ORTHO05D006060 2.2e-17 92.8 95 50.5
Aqoxy1G00104 Aquilegia oxysepala HOM05D000558 ORTHO05D006060 2.9e-17 92.4 98 49.0
Hund24508 Selenicereus undatus HOM05D000558 ORTHO05D006060 2.9e-17 92.4 94 52.1
arahy.Tifrunner.gnm1.ann1.MFRM64 Arachis hypogaea HOM05D000558 ORTHO05D006060 8.4e-17 90.9 100 49.0
COL.COLO4_10582 Corchorus olitorius HOM05D000558 ORTHO05D006060 8.4e-17 90.9 82 54.9
EL10Ac3g07350 Beta vulgaris HOM05D000558 ORTHO05D006060 1.4e-16 90.1 98 51.0
arahy.Tifrunner.gnm1.ann1.B4HFY2 Arachis hypogaea HOM05D000558 ORTHO05D006060 1.9e-16 89.7 100 49.0
Ah.13g077410 Amaranthus hybridus HOM05D000558 ORTHO05D006060 2.4e-16 89.4 98 51.0
DCAR_020629 Daucus carota HOM05D000558 ORTHO05D006060 2.4e-16 89.4 94 52.1
Gohir.A04G010500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 2.4e-16 89.4 93 51.6
BcaC07g40104 Brassica carinata HOM05D000558 ORTHO05D006060 3.2e-16 89.0 95 44.2
Phvul.001G108800 Phaseolus vulgaris HOM05D000558 ORTHO05D006060 3.2e-16 89.0 95 50.5
THA.LOC104824385 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 3.2e-16 89.0 95 44.2
Medtr7g088310 Medicago truncatula HOM05D000558 ORTHO05D006060 4.2e-16 88.6 99 48.5
BolC8t50837H Brassica oleracea HOM05D000558 ORTHO05D006060 5.4e-16 88.2 91 45.1
TPR.G20690 Trifolium pratense HOM05D000558 ORTHO05D006060 1.2e-15 87.0 99 49.5
A09p49820 Brassica napus HOM05D000558 ORTHO05D006060 1.6e-15 86.7 95 44.2
BraA09t40435Z Brassica rapa HOM05D000558 ORTHO05D006060 1.6e-15 86.7 95 44.2
Nn7g37157 Nelumbo nucifera HOM05D000558 ORTHO05D006060 2.1e-15 86.3 92 46.7
Sc13g0000760 Simmondsia chinensis HOM05D000558 ORTHO05D006060 2.1e-15 86.3 94 50.0
Ca_08343_v3 Cicer arietinum L. HOM05D000558 ORTHO05D006060 2.7e-15 85.9 98 43.9
Nn7g37160 Nelumbo nucifera HOM05D000558 ORTHO05D006060 3.5e-15 85.5 92 48.9
CDE02G1115 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 4.6e-15 85.1 95 47.4
DCAR_016943 Daucus carota HOM05D000558 ORTHO05D006060 4.6e-15 85.1 86 52.3
Sc19g0007840 Simmondsia chinensis HOM05D000558 ORTHO05D006060 7.8e-15 84.3 94 48.9
Duzib093G0609 Durio zibethinus HOM05D000558 ORTHO05D006060 1.0e-14 84.0 61 67.2
Psat3g082760 Pisum sativum HOM05D000558 ORTHO05D006060 1.3e-14 83.6 96 46.9
THA.LOC104814769 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 1.1e-13 80.5 97 40.2
HPP92_014342 Vanilla planifolia HOM05D000558 ORTHO05D006060 1.5e-13 80.1 95 44.2
Lalb_Chr14g0365281 Lupinus albus HOM05D000558 ORTHO05D006060 3.3e-13 79.0 97 47.4
HanXRQChr06g0178141 Helianthus annuus HOM05D000558 ORTHO05D006060 5.6e-13 78.2 92 43.5
TPR.G24656 Trifolium pratense HOM05D000558 ORTHO05D006060 7.3e-13 77.8 98 43.9
Solyc01g056720.4 Solanum lycopersicum HOM05D000558 ORTHO05D006060 9.6e-13 77.4 95 45.3
Lsat_1_v5_gn_8_83721 Lactuca sativa HOM05D000558 ORTHO05D006060 2.1e-12 76.3 92 41.3
HanXRQChr04g0125531 Helianthus annuus HOM05D000558 ORTHO05D006060 3.6e-12 75.5 92 41.3
MBI13_g30270_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 4.8e-12 75.1 92 45.7
SHI24500 Sapria himalayana HOM05D000558 ORTHO05D006060 4.8e-12 75.1 98 42.9
C08p32220 Brassica napus HOM05D000558 ORTHO05D006060 8.1e-12 74.3 74 47.3
BcaC07g40008 Brassica carinata HOM05D000558 ORTHO05D006060 3.1e-11 72.4 91 40.7
ATR1096G141 Amborella trichopoda HOM05D000558 ORTHO05D006060 5.3e-11 71.6 97 42.3
HPP92_006507 Vanilla planifolia HOM05D000558 ORTHO05D006060 9.0e-11 70.9 95 42.1
Psat3g082800 Pisum sativum HOM05D000558 ORTHO05D006060 2.0e-10 69.7 99 42.4
MBI19_g17998_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 9.9e-10 67.4 82 43.9
Nn7g37156 Nelumbo nucifera HOM05D000558 ORTHO05D006060 4.9e-09 65.1 96 41.7
Nn7g37159 Nelumbo nucifera HOM05D000558 ORTHO05D006060 4.9e-09 65.1 89 40.4
FAN26G2707 Fragaria x ananassa HOM05D000558 ORTHO05D006060 1.9e-08 63.2 45 64.4
Nn7g37155 Nelumbo nucifera HOM05D000558 ORTHO05D006060 2.4e-08 62.8 96 37.5
Psat0s2987g0040 Pisum sativum HOM05D000558 ORTHO05D006060 5.1e-06 55.1 66 45.5


User provided reference genes

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