Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 2.6e-253 878.2 452 100.0
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.6e-194 681.8 448 78.6
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 2.0e-192 676.0 440 78.0
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 3.7e-191 671.8 456 77.6
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 4.9e-191 671.4 445 77.8
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.1e-190 668.3 445 77.1
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 7.0e-190 667.5 453 77.5
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 2.0e-189 666.0 448 76.6
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.6e-189 664.8 448 77.0
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 6.6e-188 661.0 453 76.6
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 8.6e-188 660.6 455 77.1
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 1.1e-187 660.2 454 76.4
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 1.1e-187 660.2 455 75.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 7.3e-187 657.5 450 76.4
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 3.6e-186 655.2 450 76.2
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.2e-186 654.4 436 78.0
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.1e-185 653.7 445 76.4
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.3e-185 652.5 492 70.9
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 7.5e-184 647.5 448 75.2
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.1e-182 641.0 461 74.2
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 4.7e-178 628.2 421 76.5
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 1.1e-177 627.1 453 72.8
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 1.8e-177 626.3 425 76.0
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.4e-176 621.7 432 74.8
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.9e-171 606.3 461 69.8
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 2.5e-171 605.9 447 71.6
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.1e-170 602.8 412 76.2
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 4.7e-170 601.7 451 71.6
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 1.1e-169 600.5 430 72.3
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 6.9e-169 597.8 412 76.0
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 4.4e-168 595.1 391 77.7
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 9.9e-168 594.0 434 72.4
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 4.9e-167 591.7 407 74.7
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.4e-166 589.3 397 76.3
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 5.4e-166 588.2 388 77.1
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 9.3e-166 587.4 394 76.4
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 5.1e-164 581.6 413 71.4
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 7.3e-163 577.8 406 75.1
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 9.6e-163 577.4 402 73.9
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 1.3e-162 577.0 402 74.6
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.6e-162 575.5 391 75.4
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 4.8e-162 575.1 416 71.4
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 2.4e-161 572.8 394 74.6
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 6.9e-161 571.2 393 73.8
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.0e-160 569.7 388 73.2
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.3e-159 567.0 391 72.6
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.9e-158 563.1 407 71.7
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 4.2e-158 562.0 420 70.0
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 9.3e-158 560.8 428 68.9
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.2e-157 560.5 402 73.6
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.1e-157 559.7 397 72.5
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 2.7e-157 559.3 395 73.7
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 3.5e-157 558.9 400 73.2
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.6e-157 558.5 409 71.1
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 7.9e-157 557.8 418 70.1
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.0e-156 557.4 424 68.6
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.0e-156 557.4 381 74.8
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.3e-156 557.0 416 71.4
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.0e-156 555.8 407 71.0
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 5.1e-156 555.1 406 71.2
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 6.7e-156 554.7 360 78.1
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.9e-155 553.1 464 63.8
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 2.8e-154 549.3 446 65.9
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 4.8e-154 548.5 432 67.6
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 1.8e-153 546.6 458 63.5
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 1.8e-153 546.6 436 67.4
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.4e-153 546.2 412 70.1
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 2.6e-152 542.7 410 70.2
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 1.3e-151 540.4 459 63.2
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 2.9e-151 539.3 368 76.1
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 1.9e-150 536.6 409 68.9
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 4.2e-150 535.4 368 75.8
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 7.9e-149 531.2 493 58.6
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 6.7e-148 528.1 423 66.4
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 8.2e-146 521.2 482 58.9
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 9.0e-145 517.7 426 64.6
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 1.3e-143 513.8 372 70.7
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 8.4e-143 511.1 426 65.5
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.7e-141 506.1 331 76.7
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.5e-139 499.6 331 75.8
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 5.7e-139 498.4 373 71.3
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 5.0e-135 485.3 387 65.9
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 5.5e-134 481.9 419 60.9
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 6.1e-133 478.4 417 61.4
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 5.7e-131 471.9 394 64.0
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 6.9e-129 464.9 448 58.7
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 2.5e-126 456.4 417 57.8
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.2e-126 455.7 452 58.0
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 3.1e-121 439.5 477 55.8
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 1.0e-116 424.5 414 59.2
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.0e-116 424.5 314 69.7
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 1.4e-116 424.1 463 54.4
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 2.3e-116 423.3 460 55.9
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 3.0e-116 422.9 408 60.3
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 1.1e-115 421.0 461 56.0
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 2.6e-115 419.9 387 60.2
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 1.3e-114 417.5 427 56.9
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 2.8e-114 416.4 472 53.6
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 6.7e-108 395.2 378 60.8
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 4.1e-105 386.0 387 57.6
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 4.1e-105 386.0 387 57.6
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 1.0e-103 381.3 397 55.9
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 1.1e-102 377.9 397 54.9
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 1.2e-101 374.4 394 55.8
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 1.2e-101 374.4 394 55.8
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 2.1e-101 373.6 307 65.5
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.0e-88 330.5 285 64.2
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.0e-88 330.5 230 73.5
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 3.7e-66 256.5 362 41.2
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 8.1e-61 238.8 158 78.5
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.5e-56 223.4 423 40.4
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.3e-55 221.5 378 38.4
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 2.5e-54 217.2 139 77.7
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 6.2e-53 212.6 410 35.4
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 7.3e-46 189.1 456 34.2
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 3.6e-45 186.8 152 61.8
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 6.4e-42 176.0 396 38.1
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 8.4e-42 175.6 124 71.0
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.6e-40 171.4 109 76.1
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 4.6e-40 169.9 158 59.5
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.4e-36 158.3 122 65.6
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 9.3e-33 145.6 196 45.4
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 5.5e-25 119.8 309 30.7
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 3.5e-24 117.1 126 54.0
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 4.1e-20 103.6 81 65.4
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 1.2e-19 102.1 77 67.5
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.7e-10 71.6 216 29.6
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 2.1e-08 64.7 250 26.8
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 2.7e-08 64.3 269 24.9
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 6.1e-08 63.2 270 27.0
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 1.0e-07 62.4 414 22.7
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.8e-07 61.6 269 24.2
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.3e-07 61.2 269 23.8
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 2.3e-07 61.2 421 24.0
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 5.1e-07 60.1 281 25.6
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 1.1e-06 58.9 280 24.3
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.5e-06 58.5 56 55.4
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 2.0e-06 58.2 281 24.9
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 2.6e-06 57.8 280 23.9
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 2.6e-06 57.8 423 23.9
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 2.6e-06 57.8 367 23.7
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 3.3e-06 57.4 393 22.1
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 5.7e-06 56.6 281 26.3
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 7.4e-06 56.2 381 22.6
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 9.7e-06 55.8 401 23.2
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 9.7e-06 55.8 281 25.6
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 9.7e-06 55.8 281 25.6


User provided reference genes

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