Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05110 Coffea canephora HOM05D003716 ORTHO05D006233 1.9e-22 108.2 52 100.0
Cc00_g35800 Coffea canephora HOM05D003716 ORTHO05D006233 8.0e-21 102.8 52 96.2
Cc08_g05120 Coffea canephora HOM05D003716 ORTHO05D006233 2.0e-11 71.6 40 92.5
Cc02_g22340 Coffea canephora HOM05D003716 ORTHO05D006233 8.3e-10 66.2 51 68.6
GSVIVG01013223001 Vitis vinifera HOM05D003716 ORTHO05D006233 1.1e-09 65.9 51 64.7
GSVIVG01013224001 Vitis vinifera HOM05D003716 ORTHO05D006233 1.1e-09 65.9 51 64.7
CiPaw.02G167700 Carya illinoinensis HOM05D003716 ORTHO05D006233 4.1e-09 63.9 51 60.8
Prupe.1G117300 Prunus persica HOM05D003716 ORTHO05D006233 4.1e-09 63.9 51 58.8
Cc11_g08930 Coffea canephora HOM05D003716 ORTHO05D006233 7.0e-09 63.2 45 77.8
Gorai.001G025400 Gossypium raimondii HOM05D003716 ORTHO05D006233 1.2e-08 62.4 51 64.7
GSVIVG01013212001 Vitis vinifera HOM05D003716 ORTHO05D006233 3.5e-08 60.8 51 60.8
Migut.E00351 Erythranthe guttata HOM05D003716 ORTHO05D006233 4.5e-08 60.5 39 79.5
Glyma.15G253600 Glycine max HOM05D003716 ORTHO05D006233 4.5e-08 60.5 51 56.9
Gohir.A02G052302 Gossypium hirsutum HOM05D003716 ORTHO05D006233 5.9e-08 60.1 30 96.7
Gorai.005G187200 Gossypium raimondii HOM05D003716 ORTHO05D006233 5.9e-08 60.1 51 62.7
Manes.11G047250 Manihot esculenta HOM05D003716 ORTHO05D006233 5.9e-08 60.1 51 64.7
Prupe.8G172100 Prunus persica HOM05D003716 ORTHO05D006233 5.9e-08 60.1 51 58.8
Oeu012848.1 Olea europaea HOM05D003716 ORTHO05D006233 1.0e-07 59.3 51 56.9
Gorai.001G025100 Gossypium raimondii HOM05D003716 ORTHO05D006233 1.3e-07 58.9 51 62.7
Prupe.8G171300 Prunus persica HOM05D003716 ORTHO05D006233 1.7e-07 58.5 51 56.9
Gohir.D07G024233 Gossypium hirsutum HOM05D003716 ORTHO05D006233 2.2e-07 58.2 30 96.7
Oeu018531.1 Olea europaea HOM05D003716 ORTHO05D006233 2.2e-07 58.2 51 58.8
GSVIVG01013220001 Vitis vinifera HOM05D003716 ORTHO05D006233 2.9e-07 57.8 30 93.3
Gohir.A07G022217 Gossypium hirsutum HOM05D003716 ORTHO05D006233 3.8e-07 57.4 51 58.8
Gohir.A07G022205 Gossypium hirsutum HOM05D003716 ORTHO05D006233 5.0e-07 57.0 51 54.9
Gohir.A07G022221 Gossypium hirsutum HOM05D003716 ORTHO05D006233 5.0e-07 57.0 51 58.8
arahy.Tifrunner.gnm1.ann1.CF0C3I Arachis hypogaea HOM05D003716 ORTHO05D006233 6.5e-07 56.6 30 90.0
Gorai.013G117300 Gossypium raimondii HOM05D003716 ORTHO05D006233 6.5e-07 56.6 40 77.5
Ciclev10027385m.g Citrus clementina HOM05D003716 ORTHO05D006233 8.5e-07 56.2 43 69.8
Gohir.D13G104706 Gossypium hirsutum HOM05D003716 ORTHO05D006233 8.5e-07 56.2 40 77.5
Phvul.011G166700 Phaseolus vulgaris HOM05D003716 ORTHO05D006233 1.1e-06 55.8 46 60.9
Phvul.011G191200 Phaseolus vulgaris HOM05D003716 ORTHO05D006233 1.1e-06 55.8 46 60.9
CiPaw.02G082200 Carya illinoinensis HOM05D003716 ORTHO05D006233 1.5e-06 55.5 49 55.1
Cc02_g22370 Coffea canephora HOM05D003716 ORTHO05D006233 1.5e-06 55.5 27 100.0
Cc03_g00810 Coffea canephora HOM05D003716 ORTHO05D006233 1.5e-06 55.5 27 100.0
Migut.N02117 Erythranthe guttata HOM05D003716 ORTHO05D006233 1.5e-06 55.5 29 89.7
Gohir.A02G051801 Gossypium hirsutum HOM05D003716 ORTHO05D006233 1.5e-06 55.5 30 90.0
Manes.06G007001 Manihot esculenta HOM05D003716 ORTHO05D006233 1.5e-06 55.5 27 100.0
Prupe.1G384300 Prunus persica HOM05D003716 ORTHO05D006233 1.5e-06 55.5 27 100.0
AT3G57770 Arabidopsis thaliana HOM05D000031 ORTHO05D001033 1.9e-06 55.1 32 81.2
Migut.N02390 Erythranthe guttata HOM05D003716 ORTHO05D006233 1.9e-06 55.1 28 92.9
Potri.003G175366 Populus trichocarpa HOM05D003716 ORTHO05D006233 1.9e-06 55.1 33 78.8
Manes.02G142350 Manihot esculenta HOM05D003716 ORTHO05D006233 2.5e-06 54.7 30 90.0
AL5G45860 Arabidopsis lyrata HOM05D003716 ORTHO05D006233 3.2e-06 54.3 27 92.6
CARHR168090 Cardamine hirsuta HOM05D003716 ORTHO05D006233 3.2e-06 54.3 27 92.6
Gohir.D02G056801 Gossypium hirsutum HOM05D003716 ORTHO05D006233 3.2e-06 54.3 30 86.7
Gohir.D02G057128 Gossypium hirsutum HOM05D003716 ORTHO05D006233 3.2e-06 54.3 30 90.0
Gohir.D11G248340 Gossypium hirsutum HOM05D003716 ORTHO05D006233 3.2e-06 54.3 27 96.3
Gorai.001G025200 Gossypium raimondii HOM05D003716 ORTHO05D006233 3.2e-06 54.3 30 90.0
Gorai.007G264800 Gossypium raimondii HOM05D003716 ORTHO05D006233 3.2e-06 54.3 27 96.3
Lj1g0005700 Lotus japonicus HOM05D003716 ORTHO05D006233 3.2e-06 54.3 27 92.6
Phvul.007G073700 Phaseolus vulgaris HOM05D003716 ORTHO05D006233 3.2e-06 54.3 39 66.7
Sed0025894 Sechium edule HOM05D003716 ORTHO05D006233 3.2e-06 54.3 28 92.9
GSVIVG01007699001 Vitis vinifera HOM05D001815 ORTHO05D001830 3.2e-06 54.3 50 66.0
GSVIVG01013209001 Vitis vinifera HOM05D003716 ORTHO05D006233 3.2e-06 54.3 27 96.3
GSVIVG01013210001 Vitis vinifera HOM05D003716 ORTHO05D006233 3.2e-06 54.3 27 96.3
CiPaw.02G098700 Carya illinoinensis HOM05D003716 ORTHO05D006233 4.2e-06 53.9 28 92.9
Cc00_g27890 Coffea canephora HOM05D003716 ORTHO05D006233 4.2e-06 53.9 26 100.0
Gohir.A11G237900 Gossypium hirsutum HOM05D003716 ORTHO05D006233 4.2e-06 53.9 26 100.0
Gohir.A11G239260 Gossypium hirsutum HOM05D003716 ORTHO05D006233 4.2e-06 53.9 26 100.0
Gohir.D11G249166 Gossypium hirsutum HOM05D003716 ORTHO05D006233 4.2e-06 53.9 26 100.0
Manes.05G096850 Manihot esculenta HOM05D003716 ORTHO05D006233 4.2e-06 53.9 27 96.3
AT1G16820 Arabidopsis thaliana HOM05D003490 ORTHO05D026861 5.5e-06 53.5 26 96.2
Migut.N01394 Erythranthe guttata HOM05D003716 ORTHO05D006233 5.5e-06 53.5 28 89.3
Glyma.06G203600 Glycine max HOM05D003716 ORTHO05D006233 5.5e-06 53.5 27 92.6
Glyma.20G101900 Glycine max HOM05D003716 ORTHO05D006233 5.5e-06 53.5 26 96.2
Phvul.003G120550 Phaseolus vulgaris HOM05D003716 ORTHO05D006233 5.5e-06 53.5 26 96.2
Sopen02g031340 Solanum pennellii HOM05D003716 ORTHO05D006233 5.5e-06 53.5 26 96.2
Gorai.005G064400 Gossypium raimondii HOM05D003716 ORTHO05D006233 7.2e-06 53.1 30 86.7
Phvul.011G146100 Phaseolus vulgaris HOM05D003716 ORTHO05D006233 7.2e-06 53.1 27 92.6
Phvul.011G190000 Phaseolus vulgaris HOM05D003716 ORTHO05D006233 7.2e-06 53.1 27 92.6
SEGI_10578 Sequoiadendron giganteum HOM05D003716 ORTHO05D006233 7.2e-06 53.1 49 59.2
arahy.Tifrunner.gnm1.ann1.IES0YP Arachis hypogaea HOM05D000833 ORTHO05D000969 9.5e-06 52.8 28 82.1
A08p31790 Brassica napus HOM05D003716 ORTHO05D006233 9.5e-06 52.8 27 88.9
C03p14710 Brassica napus HOM05D003716 ORTHO05D006233 9.5e-06 52.8 27 88.9
BolC8t49321H Brassica oleracea HOM05D003716 ORTHO05D006233 9.5e-06 52.8 28 89.3
BraA03t10566Z Brassica rapa HOM05D003716 ORTHO05D006233 9.5e-06 52.8 27 88.9
Gohir.A13G101205 Gossypium hirsutum HOM05D003716 ORTHO05D006233 9.5e-06 52.8 40 72.5
Gorai.005G063000 Gossypium raimondii HOM05D003716 ORTHO05D006233 9.5e-06 52.8 35 80.0
Gorai.005G065000 Gossypium raimondii HOM05D003716 ORTHO05D006233 9.5e-06 52.8 35 80.0
Phvul.011G191100 Phaseolus vulgaris HOM05D003716 ORTHO05D006233 9.5e-06 52.8 27 88.9
Sabra16G0159800 Salix brachista HOM05D033798 ORTHO05D006233 9.5e-06 52.8 26 96.2
GSVIVG01013214001 Vitis vinifera HOM05D003716 ORTHO05D006233 9.5e-06 52.8 26 96.2


User provided reference genes

Program Settings