Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 3.5e-149 531.6 260 100.0
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 2.9e-95 352.4 250 68.4
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.5e-91 340.1 254 65.7
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.9e-91 339.7 254 65.7
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 3.3e-91 339.0 252 62.7
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.6e-90 336.7 247 67.2
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 3.7e-90 335.5 256 62.9
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 4.8e-90 335.1 253 63.6
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 6.2e-90 334.7 254 65.7
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 1.5e-88 330.1 254 65.4
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 3.4e-88 328.9 254 65.0
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 3.8e-87 325.5 252 61.5
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.4e-86 323.6 252 61.9
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.6e-85 320.1 252 63.9
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 6.0e-85 318.2 238 65.1
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.8e-84 316.6 250 64.4
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 3.9e-84 315.5 255 60.8
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 3.9e-84 315.5 248 61.7
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 6.7e-84 314.7 204 72.1
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 8.7e-84 314.3 256 59.4
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.9e-83 313.2 252 59.9
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 2.5e-83 312.8 250 62.0
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 3.3e-83 312.4 254 59.1
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 5.6e-83 311.6 253 62.1
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 7.4e-83 311.2 253 59.7
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.1e-82 309.7 252 60.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 3.7e-82 308.9 254 59.4
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 4.8e-82 308.5 254 59.1
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 4.8e-82 308.5 257 58.8
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 6.2e-82 308.1 254 59.1
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 3.1e-81 305.8 252 59.9
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 5.3e-81 305.1 252 59.1
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 9.0e-81 304.3 248 58.9
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 9.0e-81 304.3 249 59.4
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 2.0e-80 303.1 247 59.9
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 2.0e-80 303.1 252 59.9
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 4.5e-80 302.0 248 59.3
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 4.5e-80 302.0 251 59.4
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.0e-79 300.8 248 58.9
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 1.7e-79 300.1 248 58.9
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 6.5e-79 298.1 248 58.9
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 1.1e-78 297.4 254 58.3
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.4e-78 297.0 248 58.1
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 1.9e-78 296.6 250 58.8
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 7.1e-78 294.7 251 58.2
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 2.1e-77 293.1 250 58.4
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 6.0e-77 291.6 223 62.3
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 7.9e-77 291.2 255 56.9
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 1.0e-76 290.8 253 58.1
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.3e-76 290.4 270 54.1
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.3e-76 290.4 270 54.1
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.9e-75 286.6 250 57.6
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 2.1e-74 283.1 250 56.4
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 2.8e-74 282.7 252 57.5
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.1e-73 280.8 224 61.2
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.4e-73 280.4 251 55.4
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 3.1e-73 279.3 251 56.6
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 6.9e-73 278.1 250 57.6
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 2.0e-72 276.6 250 55.6
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 7.6e-72 274.6 248 55.6
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 7.6e-72 274.6 204 63.2
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 7.6e-72 274.6 255 53.3
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 7.6e-72 274.6 156 80.8
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 8.5e-71 271.2 252 54.4
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 8.5e-71 271.2 252 54.4
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 1.1e-70 270.8 226 58.8
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 2.5e-70 269.6 232 56.5
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 2.5e-70 269.6 232 56.9
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 3.2e-70 269.2 249 54.2
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 4.2e-70 268.9 250 54.4
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 5.5e-70 268.5 254 54.3
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 9.3e-70 267.7 248 55.2
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 3.6e-69 265.8 251 54.2
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 1.3e-68 263.8 251 54.2
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 6.7e-68 261.5 232 54.3
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 8.7e-68 261.2 250 51.6
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.9e-67 260.0 254 51.6
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 1.9e-67 260.0 262 51.5
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 2.5e-67 259.6 260 52.3
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 2.5e-67 259.6 260 52.3
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 2.5e-67 259.6 247 52.6
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 3.3e-67 259.2 158 77.2
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 3.3e-67 259.2 249 53.8
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 9.7e-67 257.7 248 54.4
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.7e-66 256.9 263 51.7
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.7e-66 256.9 263 51.7
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 1.7e-66 256.9 232 55.2
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.7e-66 256.9 251 53.8
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 8.2e-66 254.6 213 58.7
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 6.9e-65 251.5 258 51.9
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 1.2e-64 250.8 239 51.5
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 2.6e-64 249.6 253 53.8
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 3.2e-62 242.7 155 75.5
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 2.1e-61 240.0 217 55.3
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 3.6e-61 239.2 151 72.2
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 1.4e-60 237.3 272 48.2
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 1.4e-60 237.3 179 62.6
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 3.9e-60 235.7 248 51.6
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.1e-59 234.2 157 70.1
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 1.5e-59 233.8 246 51.6
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 5.7e-59 231.9 151 73.5
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 1.7e-58 230.3 316 42.1
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 6.3e-58 228.4 215 54.0
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 1.8e-57 226.9 249 49.8
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 2.6e-56 223.0 190 60.0
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 5.9e-56 221.9 249 47.4
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.2e-53 214.2 347 37.5
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 2.1e-53 213.4 239 46.9
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.7e-53 213.0 206 51.9
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 3.3e-51 206.1 183 56.3
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 8.2e-50 201.4 145 67.6
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 3.8e-47 192.6 249 45.4
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 1.5e-46 190.7 202 46.5
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 3.6e-45 186.0 248 44.4
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 3.8e-39 166.0 150 54.0
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.9e-38 163.7 181 48.1
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 4.1e-33 146.0 125 57.6
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 3.6e-29 132.9 187 41.7
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.7e-26 124.0 82 68.3
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 1.2e-24 117.9 206 35.4
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 1.9e-22 110.5 203 32.5
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.8e-17 94.0 105 41.9
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 3.0e-15 86.7 105 40.0
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 6.2e-13 79.0 50 68.0
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 2.3e-12 77.0 107 38.3
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 5.2e-12 75.9 109 45.9
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 4.4e-11 72.8 44 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 7.5e-11 72.0 187 31.6
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 1.2e-08 64.7 40 62.5


User provided reference genes

Program Settings