Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 2.0e-117 426.0 258 100.0
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 3.9e-44 182.6 253 59.3
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 2.8e-42 176.4 238 58.4
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 2.6e-40 169.9 238 58.4
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.3e-39 167.5 259 56.0
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.7e-39 167.2 260 56.2
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 2.9e-39 166.4 260 56.5
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 8.5e-39 164.9 256 57.0
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 4.2e-38 162.5 238 56.7
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 5.5e-38 162.2 260 55.0
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 9.4e-38 161.4 258 54.7
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 1.6e-37 160.6 238 55.9
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 4.6e-37 159.1 260 53.1
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 6.1e-37 158.7 251 56.6
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 6.1e-37 158.7 244 54.9
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 7.9e-37 158.3 260 55.4
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 7.9e-37 158.3 237 56.5
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.4e-36 157.5 238 55.5
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 1.4e-36 157.5 257 53.7
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 3.0e-36 156.4 262 54.6
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 3.0e-36 156.4 260 54.2
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 5.1e-36 155.6 258 54.3
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 5.1e-36 155.6 241 55.6
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 6.7e-36 155.2 261 54.0
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 1.7e-34 150.6 259 53.7
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.4e-33 147.5 203 46.8
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 1.8e-33 147.1 249 55.8
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 5.3e-33 145.6 253 54.5
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 9.1e-33 144.8 239 53.1
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 2.0e-32 143.7 245 52.7
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 2.6e-32 143.3 274 51.5
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 4.5e-32 142.5 243 52.3
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 5.9e-32 142.1 307 46.3
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 7.7e-32 141.7 282 50.4
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 7.7e-32 141.7 198 61.6
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 1.3e-31 141.0 239 54.8
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 2.9e-31 139.8 237 52.3
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 5.0e-31 139.0 244 50.8
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 2.5e-30 136.7 249 49.8
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 1.6e-29 134.0 258 51.2
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.6e-29 134.0 237 53.6
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 3.6e-29 132.9 238 52.1
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.6e-29 132.9 237 53.2
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 4.7e-29 132.5 238 52.9
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.7e-29 132.5 100 66.0
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 6.1e-29 132.1 237 53.6
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 7.9e-29 131.7 240 52.1
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 7.9e-29 131.7 237 53.2
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 3.9e-28 129.4 241 51.0
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 3.9e-28 129.4 241 51.0
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 5.1e-28 129.0 249 49.8
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 1.5e-27 127.5 241 51.0
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 1.5e-27 127.5 241 51.0
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 2.0e-27 127.1 259 49.8
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 2.6e-27 126.7 276 48.2
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 7.4e-27 125.2 240 49.6
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.7e-26 124.0 240 50.8
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 2.2e-26 123.6 241 49.0
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 2.2e-26 123.6 240 50.4
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 3.7e-26 122.9 240 50.4
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 4.8e-26 122.5 245 48.6
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 6.3e-26 122.1 250 49.6
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 6.3e-26 122.1 263 47.9
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 6.3e-26 122.1 242 50.4
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 6.3e-26 122.1 256 48.8
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 6.3e-26 122.1 170 62.9
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 8.2e-26 121.7 240 50.8
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 1.1e-25 121.3 240 49.6
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.1e-25 121.3 240 50.0
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 1.8e-25 120.6 259 48.6
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 4.1e-25 119.4 263 47.9
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 7.0e-25 118.6 386 37.3
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 7.0e-25 118.6 237 49.8
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 2.0e-24 117.1 237 49.4
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 5.9e-24 115.5 258 46.1
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 7.7e-24 115.2 248 48.4
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 1.7e-23 114.0 259 47.5
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 1.7e-23 114.0 256 48.0
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 2.2e-23 113.6 88 67.0
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 3.8e-23 112.8 72 77.8
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 5.0e-23 112.5 186 50.0
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 1.1e-22 111.3 69 79.7
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 1.9e-22 110.5 257 47.1
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.9e-22 110.5 263 45.6
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 3.2e-22 109.8 287 43.6
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 4.2e-22 109.4 187 39.6
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 4.2e-22 109.4 100 61.0
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 5.5e-22 109.0 278 46.0
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 2.1e-21 107.1 175 54.9
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 2.7e-21 106.7 250 43.6
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 2.7e-21 106.7 250 43.6
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 2.7e-21 106.7 202 53.0
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 1.0e-20 104.8 240 47.9
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 1.0e-20 104.8 82 67.1
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 3.0e-20 103.2 80 68.8
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 1.1e-19 101.3 66 77.3
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 1.5e-19 100.9 173 37.0
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 2.6e-19 100.1 239 46.4
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 2.6e-19 100.1 246 44.3
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 3.7e-18 96.3 241 45.2
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 4.8e-18 95.9 207 46.4
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 1.4e-17 94.4 245 44.5
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 2.0e-16 90.5 202 50.0
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 3.5e-16 89.7 58 77.6
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 5.0e-15 85.9 69 58.0
COL.COLO4_12070 Corchorus olitorius HOM05D006475 ORTHO05D007969 1.5e-14 84.3 177 53.7
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 1.9e-14 84.0 68 58.8
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 2.5e-14 83.6 271 40.6
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 1.6e-13 80.9 273 41.8
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.7e-13 80.1 203 49.8
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 8.0e-13 78.6 64 57.8
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.3e-12 77.0 44 81.8
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 4.0e-12 76.3 71 60.6
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 5.2e-12 75.9 48 79.2
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 1.2e-11 74.7 66 51.5
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 2.6e-11 73.6 48 77.1
Sabra01G0100900 Salix brachista HOM05D006475 ORTHO05D007969 1.3e-10 71.2 167 35.3
ATR0829G038 Amborella trichopoda HOM05D006475 ORTHO05D007969 3.7e-10 69.7 186 47.3
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 8.3e-10 68.6 237 40.1
Glyma.07G085800 Glycine max HOM05D003621 ORTHO05D004259 1.6e-08 64.3 119 33.6
Glyma.09G191100 Glycine max HOM05D003621 ORTHO05D004259 3.5e-08 63.2 119 32.8
PSO782G0111 Papaver somniferum HOM05D003621 ORTHO05D004259 4.5e-08 62.8 104 32.7
Phvul.004G163800 Phaseolus vulgaris HOM05D003621 ORTHO05D004259 4.5e-08 62.8 119 32.8
PSO832G1684 Papaver somniferum HOM05D003621 ORTHO05D004259 5.9e-08 62.4 104 32.7
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 1.0e-07 61.6 201 43.3
Atru.chr7.1358 Acer truncatum HOM05D003621 ORTHO05D004259 1.3e-07 61.2 104 32.7
Gorai.001G174500 Gossypium raimondii HOM05D006909 ORTHO05D008682 1.3e-07 61.2 38 81.6
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 2.2e-07 60.5 45 62.2
Duzib168G1477 Durio zibethinus HOM05D003621 ORTHO05D004259 2.2e-07 60.5 126 29.4
Os02g0266300 Oryza sativa ssp. japonica HOM05D003621 ORTHO05D004259 2.2e-07 60.5 105 35.2
Migut.J01110 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.9e-07 60.1 104 33.7
SGA_v2.0_scaffold30G12371 Striga asiatica HOM05D003621 ORTHO05D004259 2.9e-07 60.1 126 31.7
Gohir.D13G202000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 3.8e-07 59.7 121 30.6
Lsat_1_v5_gn_7_40780 Lactuca sativa HOM05D003621 ORTHO05D004259 3.8e-07 59.7 112 33.9
COL.COLO4_34873 Corchorus olitorius HOM05D003621 ORTHO05D004259 5.0e-07 59.3 104 31.7
Gohir.A13G196700 Gossypium hirsutum HOM05D003621 ORTHO05D004259 5.0e-07 59.3 121 30.6
Gohir.D07G006000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 5.0e-07 59.3 104 30.8
Gorai.001G005600 Gossypium raimondii HOM05D003621 ORTHO05D004259 5.0e-07 59.3 104 30.8
Gorai.013G230900 Gossypium raimondii HOM05D003621 ORTHO05D004259 5.0e-07 59.3 121 30.6
Oeu044981.1 Olea europaea HOM05D003621 ORTHO05D004259 5.0e-07 59.3 104 31.7
HPP92_005264 Vanilla planifolia HOM05D003621 ORTHO05D004259 5.0e-07 59.3 125 32.8
Ah.14g082090 Amaranthus hybridus HOM05D003621 ORTHO05D004259 6.5e-07 58.9 104 31.7
MSTRG.19588 Avicennia marina HOM05D003621 ORTHO05D004259 6.5e-07 58.9 121 31.4
Lj2g0018985 Lotus japonicus HOM05D003621 ORTHO05D004259 6.5e-07 58.9 119 31.9
CSS0004511 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 8.5e-07 58.5 104 32.7
Ciclev10008142m.g Citrus clementina HOM05D003621 ORTHO05D004259 8.5e-07 58.5 119 33.6
PGSC0003DMG400030220 Solanum tuberosum HOM05D003621 ORTHO05D004259 8.5e-07 58.5 121 33.1
VMungo0464G0841 Vigna mungo HOM05D003621 ORTHO05D004259 8.5e-07 58.5 104 30.8
Sopen07g012210 Solanum pennellii HOM05D003621 ORTHO05D004259 1.1e-06 58.2 121 31.4
TPR.G25311 Trifolium pratense HOM05D003621 ORTHO05D004259 1.1e-06 58.2 121 28.9
GSVIVG01015385001 Vitis vinifera HOM05D003621 ORTHO05D004259 1.5e-06 57.8 118 28.0
Migut.J01155 Erythranthe guttata HOM05D003621 ORTHO05D004259 3.2e-06 56.6 121 28.9
Sed0008991 Sechium edule HOM05D003621 ORTHO05D004259 4.2e-06 56.2 112 28.6
Zm00001eb136830 Zea mays HOM05D283639 ORTHO05D007969 4.2e-06 56.2 94 67.0
CsaV3_3G015870 Cucumis sativus L. HOM05D003621 ORTHO05D004259 5.5e-06 55.8 118 27.1
MELO3C006786.2 Cucumis melo HOM05D003621 ORTHO05D004259 7.2e-06 55.5 118 27.1
ClCG05G007150 Citrullus lanatus HOM05D003621 ORTHO05D004259 9.4e-06 55.1 118 27.1
MD02G1046000 Malus domestica HOM05D003621 ORTHO05D004259 9.4e-06 55.1 122 28.7
Os12g0599900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 9.4e-06 55.1 99 35.4


User provided reference genes

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