Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04910 Coffea canephora HOM05D006091 ORTHO05D006421 7.1e-57 223.8 119 100.0
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 1.0e-18 97.1 79 72.2
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 7.4e-14 80.9 57 68.4
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 7.4e-14 80.9 57 68.4
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 1.3e-13 80.1 48 75.0
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 4.8e-13 78.2 48 75.0
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 4.8e-13 78.2 48 72.9
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 4.8e-13 78.2 48 72.9
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 6.3e-13 77.8 49 73.5
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.4e-12 76.6 48 72.9
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.4e-12 76.6 48 72.9
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 1.4e-12 76.6 48 72.9
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 2.4e-12 75.9 48 72.9
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 2.4e-12 75.9 48 72.9
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 4.1e-12 75.1 48 72.9
CAN.G99.2 Capsicum annuum HOM05D006091 ORTHO05D006421 4.1e-12 75.1 48 70.8
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 4.1e-12 75.1 48 75.0
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 5.3e-12 74.7 48 72.9
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 5.3e-12 74.7 48 72.9
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 6.9e-12 74.3 49 69.4
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 6.9e-12 74.3 48 72.9
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 9.1e-12 73.9 48 70.8
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 9.1e-12 73.9 48 70.8
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 9.1e-12 73.9 48 70.8
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 9.1e-12 73.9 48 70.8
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 9.1e-12 73.9 48 72.9
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 1.2e-11 73.6 48 77.1
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 1.5e-11 73.2 48 70.8
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 1.5e-11 73.2 48 68.8
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 2.6e-11 72.4 49 67.3
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 2.6e-11 72.4 48 66.7
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 2.6e-11 72.4 48 68.8
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 3.4e-11 72.0 49 67.3
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 4.5e-11 71.6 48 66.7
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 4.5e-11 71.6 62 58.1
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 4.5e-11 71.6 48 68.8
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 5.9e-11 71.2 48 70.8
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 5.9e-11 71.2 49 67.3
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 5.9e-11 71.2 48 72.9
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 5.9e-11 71.2 49 67.3
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 1.0e-10 70.5 48 72.9
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 1.0e-10 70.5 48 64.6
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 1.3e-10 70.1 48 66.7
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 1.3e-10 70.1 79 49.4
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 1.7e-10 69.7 48 62.5
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 1.7e-10 69.7 48 66.7
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 2.9e-10 68.9 48 66.7
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 5.0e-10 68.2 48 66.7
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 6.5e-10 67.8 48 62.5
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 6.5e-10 67.8 48 62.5
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 6.5e-10 67.8 48 62.5
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 6.5e-10 67.8 79 50.6
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 6.5e-10 67.8 79 49.4
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 8.5e-10 67.4 79 48.1
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 8.5e-10 67.4 48 68.8
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 8.5e-10 67.4 48 68.8
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 1.1e-09 67.0 48 64.6
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 1.4e-09 66.6 48 64.6
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 2.5e-09 65.9 48 64.6
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 2.5e-09 65.9 48 66.7
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 4.2e-09 65.1 48 62.5
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 4.2e-09 65.1 80 47.5
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 9.4e-09 63.9 48 64.6
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 9.4e-09 63.9 48 64.6
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 1.2e-08 63.5 48 64.6
Haze_03314 Corylus avellana HOM05D006091 ORTHO05D006421 1.6e-08 63.2 58 55.2
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 1.6e-08 63.2 49 65.3
Glyma.16G084200 Glycine max HOM05D006091 ORTHO05D006421 2.7e-08 62.4 44 68.2
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 7.9e-08 60.8 49 59.2
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 1.0e-07 60.5 61 52.5
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 1.0e-07 60.5 44 61.4
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 3.9e-07 58.5 49 59.2
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 5.1e-07 58.2 39 64.1
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 5.1e-07 58.2 44 63.6
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 6.7e-07 57.8 48 58.3
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 6.7e-07 57.8 48 58.3
COL.COLO4_22539 Corchorus olitorius HOM05D000493 ORTHO05D001355 8.8e-07 57.4 40 67.5
Rhsim07G0255300 Rhododendron simsii HOM05D000493 ORTHO05D001355 8.8e-07 57.4 46 65.2
CANSAT25G2330 Cannabis sativa HOM05D000493 ORTHO05D001355 2.0e-06 56.2 30 90.0
CiPaw.08G180700 Carya illinoinensis HOM05D000493 ORTHO05D001355 2.0e-06 56.2 30 86.7
ClCG11G018710 Citrullus lanatus HOM05D000493 ORTHO05D001355 2.0e-06 56.2 30 90.0
Cc03_g13570 Coffea canephora HOM05D000493 ORTHO05D001355 2.0e-06 56.2 38 76.3
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
CARHR082040 Cardamine hirsuta HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
Duzib132G1168 Durio zibethinus HOM05D000493 ORTHO05D001355 2.6e-06 55.8 30 86.7
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 2.6e-06 55.8 48 56.2
Actinidia17045 Actinidia chinensis HOM05D001852 ORTHO05D001989 3.3e-06 55.5 38 73.7
MELO3C017022.2 Cucumis melo HOM05D000493 ORTHO05D001355 3.3e-06 55.5 38 76.3
CsaV3_4G037240 Cucumis sativus L. HOM05D000493 ORTHO05D001355 3.3e-06 55.5 38 76.3
Migut.N02955 Erythranthe guttata HOM05D000493 ORTHO05D001355 3.3e-06 55.5 38 76.3
Gohir.A05G254500 Gossypium hirsutum HOM05D000493 ORTHO05D001355 3.3e-06 55.5 38 76.3
Gohir.D05G256100 Gossypium hirsutum HOM05D000493 ORTHO05D001355 3.3e-06 55.5 38 76.3
Gorai.009G267700 Gossypium raimondii HOM05D000493 ORTHO05D001355 3.3e-06 55.5 38 76.3
Nn6g31723 Nelumbo nucifera HOM05D000493 ORTHO05D001355 3.3e-06 55.5 30 86.7
Lsat_1_v5_gn_2_3921 Lactuca sativa HOM05D000493 ORTHO05D024858 4.4e-06 55.1 53 54.7
Lj1g0005045 Lotus japonicus HOM05D000493 ORTHO05D001355 4.4e-06 55.1 30 86.7
Sed0000322 Sechium edule HOM05D000493 ORTHO05D001355 4.4e-06 55.1 38 73.7
MSTRG.980 Avicennia marina HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
CiPaw.07G003900 Carya illinoinensis HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
Cc10_g00620 Coffea canephora HOM05D000493 ORTHO05D001355 5.7e-06 54.7 38 76.3
Eucgr.J02529 Eucalyptus grandis HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
Nitab4.5_0005719g0030 Nicotiana tabacum HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
PGR031G3233 Punica granatum HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
Solyc03g032190.3 Solanum lycopersicum HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
Sopen03g006030 Solanum pennellii HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
PGSC0003DMG400018674 Solanum tuberosum HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
unitig_899.g14723 Utricularia gibba HOM05D000493 ORTHO05D001355 5.7e-06 54.7 30 83.3
vmacro03553 Vaccinium macrocarpon HOM05D000493 ORTHO05D001355 5.7e-06 54.7 38 71.1
CAN.G354.20 Capsicum annuum HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 71.1
Ciclev10001235m.g Citrus clementina HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 71.1
Duzib041G0120 Durio zibethinus HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 73.7
Migut.C00388 Erythranthe guttata HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 71.1
Oeu007478.1 Olea europaea HOM05D000493 ORTHO05D001355 7.4e-06 54.3 30 86.7
Oeu035841.1 Olea europaea HOM05D000493 ORTHO05D001355 7.4e-06 54.3 39 74.4
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 7.4e-06 54.3 56 50.0
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 7.4e-06 54.3 56 50.0
Peaxi162Scf00442g00115 Petunia axillaris HOM05D000493 ORTHO05D001355 7.4e-06 54.3 30 80.0
PGR083G2581 Punica granatum HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 71.1
Rhsim06G0006700 Rhododendron simsii HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 71.1
SalBow6G5575 Salvia bowleyana HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 73.7
GSVIVG01009895001 Vitis vinifera HOM05D000493 ORTHO05D001355 7.4e-06 54.3 38 71.1
CiPaw.08G073700 Carya illinoinensis HOM05D000493 ORTHO05D001355 9.7e-06 53.9 50 60.0
Hma1.2p1_1100F.1_g256980 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 9.7e-06 53.9 35 77.1
Hma1.2p1_1100F.1_g256985 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 9.7e-06 53.9 35 77.1
Lj2A496T44 Lonicera japonica HOM05D000493 ORTHO05D001355 9.7e-06 53.9 46 58.7
Lj2C494G8 Lonicera japonica HOM05D000493 ORTHO05D001355 9.7e-06 53.9 38 71.1
Prupe.7G180800 Prunus persica HOM05D000493 ORTHO05D001355 9.7e-06 53.9 30 80.0
SGA_v2.0_scaffold108G30982 Striga asiatica HOM05D000493 ORTHO05D001355 9.7e-06 53.9 38 71.1
TWI12G0754 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 9.7e-06 53.9 35 80.0
TWI36G1039 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 9.7e-06 53.9 35 80.0
unitig_32.g11164 Utricularia gibba HOM05D000493 ORTHO05D001355 9.7e-06 53.9 38 71.1
HPP92_002451 Vanilla planifolia HOM05D000493 ORTHO05D001355 9.7e-06 53.9 30 83.3
GSVIVG01023978001 Vitis vinifera HOM05D000493 ORTHO05D001355 9.7e-06 53.9 30 80.0


User provided reference genes

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