Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 9.4e-139 496.9 257 100.0
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 4.6e-85 318.5 223 79.4
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 9.6e-67 257.7 233 65.2
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 2.3e-60 236.5 188 73.4
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 5.1e-60 235.3 190 71.6
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 1.5e-59 233.8 223 58.3
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.4e-57 227.3 223 55.6
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 1.8e-57 226.9 223 55.6
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.8e-57 226.9 223 55.6
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 4.0e-57 225.7 226 56.6
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 6.9e-57 224.9 223 57.8
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 9.0e-57 224.6 223 56.1
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 2.6e-56 223.0 223 55.6
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 3.4e-56 222.6 223 57.8
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 4.5e-56 222.2 230 56.1
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 4.5e-56 222.2 223 56.1
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 5.8e-56 221.9 229 55.5
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 1.3e-55 220.7 224 55.8
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 8.4e-55 218.0 228 54.8
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 8.4e-55 218.0 193 69.4
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 7.1e-54 214.9 227 55.5
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 7.1e-54 214.9 228 56.1
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 1.2e-53 214.2 225 53.8
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 1.6e-53 213.8 238 52.9
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 2.7e-53 213.0 231 52.4
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 3.5e-53 212.6 228 56.1
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 6.0e-53 211.8 229 54.1
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 1.3e-52 210.7 223 52.5
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 3.9e-52 209.1 228 55.3
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 3.9e-52 209.1 225 56.0
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 1.1e-51 207.6 226 53.5
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.5e-51 207.2 227 55.9
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 1.3e-50 204.1 228 54.8
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 2.1e-50 203.4 229 54.1
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 3.7e-50 202.6 249 48.2
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 4.8e-50 202.2 228 53.1
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 6.2e-50 201.8 225 51.6
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 8.1e-50 201.4 228 52.2
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 1.1e-49 201.1 226 51.3
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 2.4e-49 199.9 225 52.0
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 5.3e-49 198.7 225 50.7
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 6.9e-49 198.4 226 49.6
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 1.2e-48 197.6 230 50.4
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.5e-48 197.2 229 49.8
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 2.6e-48 196.4 229 49.8
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 3.4e-48 196.1 230 50.0
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 7.6e-48 194.9 230 50.0
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 2.9e-47 193.0 225 49.3
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 2.9e-47 193.0 228 51.3
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 2.9e-47 193.0 225 49.3
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 2.9e-47 193.0 232 50.0
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 8.4e-47 191.4 234 45.3
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 8.4e-47 191.4 207 55.6
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 1.4e-46 190.7 237 51.1
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 1.9e-46 190.3 279 45.9
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 2.4e-46 189.9 214 50.9
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 2.4e-46 189.9 228 51.3
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 3.2e-46 189.5 226 54.0
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 4.2e-46 189.1 225 48.9
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 7.1e-46 188.3 237 49.8
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 7.1e-46 188.3 226 50.4
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 7.1e-46 188.3 233 50.2
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 9.3e-46 188.0 229 51.5
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 9.3e-46 188.0 226 50.4
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 9.3e-46 188.0 231 50.6
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 1.2e-45 187.6 225 48.4
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 1.6e-45 187.2 229 48.5
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 1.6e-45 187.2 225 48.9
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.6e-45 187.2 223 51.6
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 2.1e-45 186.8 225 48.9
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 2.1e-45 186.8 234 50.9
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 2.7e-45 186.4 225 48.9
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 3.5e-45 186.0 228 51.3
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 6.0e-45 185.3 229 47.6
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 7.9e-45 184.9 215 54.4
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.8e-44 183.7 229 47.2
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 3.0e-44 183.0 226 47.8
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 5.1e-44 182.2 225 48.4
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 5.1e-44 182.2 176 61.4
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 8.7e-44 181.4 229 50.7
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 8.7e-44 181.4 232 49.6
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 8.7e-44 181.4 230 50.9
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 1.5e-43 180.6 226 48.2
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 4.3e-43 179.1 217 51.2
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 4.3e-43 179.1 217 50.7
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 9.6e-43 177.9 227 49.3
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 9.6e-43 177.9 227 48.9
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 1.3e-42 177.6 226 46.9
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.6e-42 177.2 186 57.0
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.1e-42 176.8 227 46.7
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.1e-42 176.8 217 50.2
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 2.8e-42 176.4 227 46.3
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 3.7e-42 176.0 215 50.7
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 3.7e-42 176.0 230 49.6
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 4.8e-42 175.6 229 47.2
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 6.2e-42 175.3 200 54.5
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 6.2e-42 175.3 214 50.9
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 8.2e-42 174.9 227 47.6
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 8.2e-42 174.9 215 50.2
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 8.2e-42 174.9 230 48.7
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 1.1e-41 174.5 228 47.4
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 1.1e-41 174.5 219 50.2
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 2.4e-41 173.3 227 47.6
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.4e-41 173.3 227 47.6
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.1e-41 172.9 227 46.7
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 3.1e-41 172.9 230 48.7
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 4.0e-41 172.6 227 46.3
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 5.3e-41 172.2 234 44.4
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 5.3e-41 172.2 227 48.0
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 6.9e-41 171.8 227 45.4
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 6.9e-41 171.8 227 45.4
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 6.9e-41 171.8 227 45.4
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 1.2e-40 171.0 233 44.6
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 2.0e-40 170.2 223 47.1
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 2.6e-40 169.9 270 41.9
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 3.4e-40 169.5 225 47.1
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 3.4e-40 169.5 227 45.4
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 4.5e-40 169.1 226 45.6
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 1.3e-39 167.5 225 46.7
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 1.3e-39 167.5 225 44.4
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.9e-39 165.6 223 45.7
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.1e-38 164.5 223 45.7
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.9e-38 163.7 226 46.0
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 3.2e-38 162.9 180 55.6
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 7.1e-38 161.8 226 46.0
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 7.1e-38 161.8 230 45.2
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 9.3e-38 161.4 232 45.7
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 9.3e-38 161.4 208 51.0
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.1e-37 160.2 230 43.5
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 2.7e-37 159.8 226 45.1
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 2.7e-37 159.8 227 45.8
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 2.7e-37 159.8 226 45.1
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 3.5e-37 159.5 198 53.0
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 3.5e-37 159.5 204 49.0
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 6.0e-37 158.7 206 48.5
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 7.9e-37 158.3 225 44.0
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 7.9e-37 158.3 227 44.9
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.0e-36 157.9 204 49.0
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.8e-36 157.1 212 46.2
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 3.0e-36 156.4 227 44.5
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 8.7e-36 154.8 225 45.3
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 1.9e-35 153.7 198 43.9
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.3e-35 152.5 223 43.0
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 7.4e-35 151.8 225 43.6
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 7.4e-35 151.8 226 41.2
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.3e-34 151.0 226 46.5
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.2e-34 148.3 234 43.6
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.5e-32 144.1 178 49.4
Cc08_g04950 Coffea canephora HOM05D003598 ORTHO05D004198 2.6e-32 143.3 96 85.4
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 3.4e-32 142.9 99 73.7
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.4e-30 137.5 187 49.2
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 5.5e-30 135.6 192 47.4
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.6e-29 132.9 183 48.1
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.3e-28 131.0 202 41.6
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 1.8e-28 130.6 100 69.0
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 1.9e-27 127.1 205 41.0
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 9.7e-27 124.8 216 44.0
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 1.6e-26 124.0 169 44.4
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.2e-26 123.6 95 71.6
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 6.9e-25 118.6 76 78.9
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 9.1e-25 118.2 100 65.0
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.2e-24 117.9 88 72.7
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.0e-24 117.1 218 39.9
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 2.0e-24 117.1 182 44.5
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.0e-23 114.8 71 78.9
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 4.2e-22 109.4 83 63.9
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 1.2e-21 107.8 187 38.0
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 1.6e-21 107.5 83 67.5
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 5.1e-20 102.4 66 72.7
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 1.4e-17 94.4 231 32.5
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 5.0e-15 85.9 290 29.0
Lsat_1_v5_gn_6_87320 Lactuca sativa HOM05D003598 ORTHO05D009814 1.9e-14 84.0 187 34.2
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 4.7e-13 79.3 248 29.0
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 1.8e-12 77.4 254 29.5
C09p58280 Brassica napus HOM05D003598 ORTHO05D004198 5.2e-12 75.9 110 39.1
BcaB08g36681 Brassica carinata HOM05D003598 ORTHO05D004198 9.7e-11 71.6 155 34.8
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 1.1e-09 68.2 298 26.2
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 2.0e-08 63.9 228 28.1
QL04p035400 Quercus lobata HOM05D000021 ORTHO05D000010 8.5e-07 58.5 85 45.9
TAR256G0009 Trochodendron aralioides HOM05D017516 ORTHO05D019582 8.5e-07 58.5 174 33.9
Actinidia24399 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.1e-06 58.2 80 42.5
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 1.9e-06 57.4 43 65.1
QL09p042102 Quercus lobata HOM05D003598 ORTHO05D004198 3.2e-06 56.6 117 35.9
QL02p006829 Quercus lobata HOM05D006704 ORTHO05D004198 9.4e-06 55.1 69 50.7


User provided reference genes

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