Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 3.3e-82 308.5 178 100.0
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 6.5e-30 134.8 91 82.4
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 1.0e-14 84.3 97 52.6
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 1.0e-14 84.3 82 59.8
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 1.3e-14 84.0 82 61.0
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 1.7e-14 83.6 82 59.8
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 9.4e-13 77.8 84 52.4
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 3.6e-12 75.9 103 49.5
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 3.6e-12 75.9 103 49.5
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 3.0e-11 72.8 86 48.8
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 6.7e-11 71.6 85 51.8
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 3.3e-10 69.3 79 54.4
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 5.7e-10 68.6 92 46.7
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 1.7e-09 67.0 83 48.2
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 2.2e-09 66.6 78 51.3
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 2.8e-09 66.2 91 47.3
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 2.8e-09 66.2 104 45.2
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 3.7e-09 65.9 94 46.8
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 4.8e-09 65.5 104 44.2
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 4.8e-09 65.5 100 50.0
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 4.8e-09 65.5 99 45.5
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 8.2e-09 64.7 89 47.2
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 1.4e-08 63.9 100 46.0
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 1.8e-08 63.5 78 50.0
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 1.8e-08 63.5 98 43.9
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 4.1e-08 62.4 80 48.8
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 5.3e-08 62.0 78 47.4
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 7.0e-08 61.6 98 42.9
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 1.2e-07 60.8 95 46.3
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.6e-07 60.5 83 47.0
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 1.6e-07 60.5 78 47.4
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 2.0e-07 60.1 49 63.3
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 2.0e-07 60.1 82 45.1
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 2.6e-07 59.7 77 46.8
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 2.6e-07 59.7 82 47.6
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 3.5e-07 59.3 93 40.9
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 3.5e-07 59.3 145 40.0
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 3.5e-07 59.3 105 46.7
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 5.9e-07 58.5 79 45.6
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 7.7e-07 58.2 100 40.0
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 7.7e-07 58.2 84 46.4
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 7.7e-07 58.2 79 44.3
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 1.0e-06 57.8 85 42.4
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 1.3e-06 57.4 77 46.8
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 1.7e-06 57.0 79 46.8
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.7e-06 57.0 78 42.3
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 2.2e-06 56.6 78 43.6
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 2.2e-06 56.6 79 43.0
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 2.9e-06 56.2 101 40.6
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 2.9e-06 56.2 79 44.3
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 2.9e-06 56.2 78 41.0
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 2.9e-06 56.2 52 55.8
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 2.9e-06 56.2 49 55.1
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 3.8e-06 55.8 78 41.0
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 3.8e-06 55.8 85 42.4
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 5.0e-06 55.5 98 41.8
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 5.0e-06 55.5 99 38.4
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 5.0e-06 55.5 82 43.9
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 5.0e-06 55.5 96 39.6
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 5.0e-06 55.5 82 45.1
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 6.5e-06 55.1 90 41.1
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 6.5e-06 55.1 96 38.5


User provided reference genes

Program Settings