Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 7.8e-103 377.1 185 100.0
Cc08_g04580 Coffea canephora HOM05D006336 ORTHO05D007819 2.2e-97 359.0 185 96.2
Cc08_g04540 Coffea canephora HOM05D006336 ORTHO05D007819 1.2e-82 310.1 161 93.2
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 2.3e-78 295.8 182 75.8
Cc08_g04510 Coffea canephora HOM05D006336 ORTHO05D007819 3.6e-76 288.5 145 96.6
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 8.1e-76 287.3 182 72.0
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 4.0e-75 285.0 182 72.5
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 5.3e-75 284.6 183 71.6
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 1.2e-74 283.5 183 71.0
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 2.0e-74 282.7 182 74.2
Cc00_g23060 Coffea canephora HOM05D006336 ORTHO05D007819 2.6e-74 282.3 145 93.8
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 7.6e-74 280.8 181 69.6
Hma1.2p1_0262F.1_g105216 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 1.3e-73 280.0 182 73.1
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 1.7e-73 279.6 184 67.9
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 2.9e-73 278.9 182 68.1
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 3.8e-73 278.5 182 70.9
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 4.9e-73 278.1 182 69.2
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 6.4e-73 277.7 182 70.3
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 8.4e-73 277.3 181 69.6
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 4.2e-72 275.0 181 68.5
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 7.1e-72 274.2 182 67.6
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 9.3e-72 273.9 184 65.8
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 1.2e-71 273.5 184 68.5
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 1.2e-71 273.5 182 67.0
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 1.2e-71 273.5 182 68.1
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 1.6e-71 273.1 182 70.3
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 4.6e-71 271.6 181 69.1
Migut.A00484 Erythranthe guttata HOM05D006336 ORTHO05D007819 7.9e-71 270.8 182 65.9
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 1.0e-70 270.4 184 66.8
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 3.0e-70 268.9 184 63.6
Lsat_1_v5_gn_6_74301 Lactuca sativa HOM05D006336 ORTHO05D007819 5.1e-70 268.1 182 68.1
HanXRQChr03g0084651 Helianthus annuus HOM05D006336 ORTHO05D007819 1.9e-69 266.2 181 68.0
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 5.6e-69 264.6 182 67.0
DCAR_002185 Daucus carota HOM05D006336 ORTHO05D007819 7.4e-69 264.2 179 68.2
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 7.4e-69 264.2 182 64.8
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 9.6e-69 263.8 182 65.9
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 2.1e-68 262.7 184 65.8
PSO135G0459 Papaver somniferum HOM05D006336 ORTHO05D007819 2.8e-68 262.3 182 64.3
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 4.8e-68 261.5 182 67.0
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 4.8e-68 261.5 184 63.0
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 1.1e-67 260.4 182 65.4
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 1.1e-67 260.4 182 67.0
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 1.1e-67 260.4 182 63.2
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 1.1e-67 260.4 184 63.6
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 1.4e-67 260.0 182 63.7
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 1.8e-67 259.6 182 63.7
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 2.4e-67 259.2 182 63.2
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 6.9e-67 257.7 209 58.4
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 6.9e-67 257.7 184 63.0
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 1.2e-66 256.9 182 61.5
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 1.5e-66 256.5 182 63.2
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 2.0e-66 256.1 182 66.5
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 2.6e-66 255.8 212 58.5
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 3.4e-66 255.4 184 60.3
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 3.4e-66 255.4 182 63.2
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 3.4e-66 255.4 182 64.8
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 3.4e-66 255.4 182 64.8
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 4.5e-66 255.0 184 62.5
ECA240G3698 Erigeron canadensis HOM05D006336 ORTHO05D007819 5.8e-66 254.6 181 64.1
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 7.6e-66 254.2 182 62.6
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 7.6e-66 254.2 184 63.6
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 7.6e-66 254.2 182 64.8
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 9.9e-66 253.8 182 61.5
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 1.7e-65 253.1 182 63.2
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 2.2e-65 252.7 182 63.7
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 2.2e-65 252.7 182 63.2
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 2.9e-65 252.3 184 62.5
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 4.9e-65 251.5 182 60.4
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 6.4e-65 251.1 182 61.5
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 8.4e-65 250.8 184 62.0
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 1.1e-64 250.4 182 62.1
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 1.4e-64 250.0 184 61.4
AUR62021599 Chenopodium quinoa HOM05D006336 ORTHO05D007819 7.1e-64 247.7 182 60.4
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 9.3e-64 247.3 184 60.9
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 9.3e-64 247.3 184 60.9
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 9.3e-64 247.3 184 60.9
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 9.3e-64 247.3 184 60.9
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 9.3e-64 247.3 184 60.9
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 9.3e-64 247.3 182 62.1
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 1.6e-63 246.5 184 61.4
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 2.1e-63 246.1 184 61.4
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 4.6e-63 245.0 182 61.0
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 8.7e-62 240.7 182 59.9
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 1.5e-61 240.0 181 59.7
Ah.11g048000 Amaranthus hybridus HOM05D006336 ORTHO05D007819 5.6e-61 238.0 178 59.6
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 9.6e-61 237.3 181 63.0
Hund02606 Selenicereus undatus HOM05D006336 ORTHO05D007819 1.3e-60 236.9 185 58.4
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 1.8e-59 233.0 176 60.8
CDE05G3418 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 2.1e-55 219.5 181 55.8
FAN15G0772 Fragaria x ananassa HOM05D006336 ORTHO05D007819 6.0e-55 218.0 155 61.9
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 4.3e-53 211.8 139 69.8
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 3.2e-48 195.7 181 50.8
Dinv37442 Davidia involucrata HOM05D006336 ORTHO05D007819 1.6e-47 193.4 139 66.9
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 7.9e-47 191.0 139 60.4
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 3.9e-46 188.7 132 65.2
Pp3c1_38250 Physcomitrium patens HOM05D006336 ORTHO05D007819 3.1e-43 179.1 181 47.0
Nitab4.5_0008291g0020 Nicotiana tabacum HOM05D006336 ORTHO05D007819 6.5e-41 171.4 165 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2113 Anthoceros agrestis HOM05D006336 ORTHO05D007819 2.5e-40 169.5 182 44.5
HPP92_019316 Vanilla planifolia HOM05D006336 ORTHO05D007819 3.2e-40 169.1 128 56.2
CDE05G3496 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 3.9e-38 162.2 181 44.2
SMO351G0262 Selaginella moellendorffii HOM05D006336 ORTHO05D007819 6.7e-38 161.4 181 42.5
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 9.7e-37 157.5 146 51.4
Mapoly0124s0049 Marchantia polymorpha HOM05D006336 ORTHO05D007819 2.9e-33 146.0 181 40.3
Cc00_g35650 Coffea canephora HOM05D006336 ORTHO05D007819 3.2e-32 142.5 68 100.0
Peaxi162Scf00014g01816 Petunia axillaris HOM05D006336 ORTHO05D007819 7.4e-29 131.3 89 68.5
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 5.9e-26 121.7 161 39.1
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 2.7e-23 112.8 80 65.0
CBR_g30757 Chara braunii HOM05D006336 ORTHO05D007819 8.0e-23 111.3 188 30.3
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.4e-22 110.5 81 65.4
Cre06.g278264 Chlamydomonas reinhardtii HOM05D006336 ORTHO05D007819 1.9e-16 90.1 126 35.7
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 1.1e-11 74.3 59 55.9
Glyma.06G258800 Glycine max HOM05D006336 ORTHO05D007819 3.8e-09 65.9 66 45.5
AUR62042784 Chenopodium quinoa HOM05D005986 ORTHO05D007467 2.1e-07 60.1 138 28.3
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 2.8e-07 59.7 139 31.7
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 1.0e-06 57.8 138 27.5
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 1.4e-06 57.4 101 33.7
AL8G10080 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 1.8e-06 57.0 54 50.0
AT5G47860 Arabidopsis thaliana HOM05D005986 ORTHO05D007467 2.3e-06 56.6 140 30.7
A06p39510 Brassica napus HOM05D005986 ORTHO05D007467 3.0e-06 56.2 140 30.7
C07p38760 Brassica napus HOM05D005986 ORTHO05D007467 3.0e-06 56.2 140 30.7
BolC7t44395H Brassica oleracea HOM05D005986 ORTHO05D007467 3.0e-06 56.2 140 30.7
BraA06t26866Z Brassica rapa HOM05D005986 ORTHO05D007467 3.0e-06 56.2 140 30.7
Thhalv10004270m.g Eutrema salsugineum HOM05D005986 ORTHO05D007467 3.0e-06 56.2 140 31.4
Pp3c24_14070 Physcomitrium patens HOM05D005986 ORTHO05D007467 3.0e-06 56.2 143 28.0
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 3.0e-06 56.2 110 28.2
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 4.0e-06 55.8 140 31.4
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 6.8e-06 55.1 140 28.6
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 6.8e-06 55.1 138 26.8
SMO145G0091 Selaginella moellendorffii HOM05D005986 ORTHO05D007467 6.8e-06 55.1 158 29.1
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 8.8e-06 54.7 139 28.8
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 8.8e-06 54.7 138 31.2
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 8.8e-06 54.7 110 28.2
Psat2g081640 Pisum sativum HOM05D003172 ORTHO05D003708 8.8e-06 54.7 41 53.7


User provided reference genes

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