Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04540 Coffea canephora HOM05D006336 ORTHO05D007819 7.2e-92 340.5 165 100.0
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 6.1e-83 310.8 161 93.2
Cc08_g04580 Coffea canephora HOM05D006336 ORTHO05D007819 1.8e-82 309.3 161 93.2
Cc00_g23060 Coffea canephora HOM05D006336 ORTHO05D007819 1.9e-76 289.3 145 97.2
Cc08_g04510 Coffea canephora HOM05D006336 ORTHO05D007819 5.5e-76 287.7 145 95.9
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 5.9e-70 267.7 156 77.6
Hma1.2p1_0262F.1_g105216 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 1.2e-67 260.0 156 76.9
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 1.8e-66 256.1 156 76.9
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 5.7e-65 251.1 155 74.2
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 9.8e-65 250.4 156 73.1
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 1.7e-64 249.6 159 71.7
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 1.7e-64 249.6 156 70.5
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 2.2e-64 249.2 163 67.5
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 2.2e-64 249.2 155 72.9
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 3.7e-64 248.4 154 70.8
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 1.4e-63 246.5 159 69.8
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 1.4e-63 246.5 155 71.0
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 2.4e-63 245.7 155 71.6
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 2.4e-63 245.7 154 71.4
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 3.2e-63 245.4 155 71.0
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 4.1e-63 245.0 157 69.4
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 9.2e-63 243.8 159 70.4
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 2.7e-62 242.3 159 69.8
HanXRQChr03g0084651 Helianthus annuus HOM05D006336 ORTHO05D007819 5.9e-62 241.1 155 69.0
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 7.8e-62 240.7 155 68.4
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 1.0e-61 240.4 154 70.1
DCAR_002185 Daucus carota HOM05D006336 ORTHO05D007819 1.3e-61 240.0 153 71.2
Lsat_1_v5_gn_6_74301 Lactuca sativa HOM05D006336 ORTHO05D007819 1.3e-61 240.0 156 68.6
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 1.7e-61 239.6 155 69.0
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 1.7e-61 239.6 155 69.7
Migut.A00484 Erythranthe guttata HOM05D006336 ORTHO05D007819 2.3e-61 239.2 155 67.7
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 3.9e-61 238.4 161 67.7
PSO135G0459 Papaver somniferum HOM05D006336 ORTHO05D007819 6.6e-61 237.7 155 67.7
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 1.5e-60 236.5 161 64.0
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 1.9e-60 236.1 155 68.4
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 1.9e-60 236.1 159 67.9
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 3.3e-60 235.3 161 66.5
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 1.6e-59 233.0 155 67.7
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 1.6e-59 233.0 159 66.0
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 2.8e-59 232.3 161 64.6
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 2.8e-59 232.3 182 59.9
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 4.7e-59 231.5 155 68.4
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 6.2e-59 231.1 155 67.1
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 8.0e-59 230.7 155 65.8
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 8.0e-59 230.7 159 64.8
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 1.0e-58 230.3 155 66.5
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 1.0e-58 230.3 155 65.8
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 1.4e-58 229.9 157 65.6
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.4e-58 229.9 155 67.1
ECA240G3698 Erigeron canadensis HOM05D006336 ORTHO05D007819 1.8e-58 229.6 155 64.5
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 1.8e-58 229.6 155 66.5
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 3.1e-58 228.8 159 63.5
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 4.0e-58 228.4 155 64.5
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 4.0e-58 228.4 159 64.8
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 1.2e-57 226.9 155 65.2
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 1.2e-57 226.9 155 67.7
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 1.2e-57 226.9 161 64.0
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 1.5e-57 226.5 155 67.7
AUR62021599 Chenopodium quinoa HOM05D006336 ORTHO05D007819 1.5e-57 226.5 155 65.2
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 2.0e-57 226.1 185 59.5
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 2.0e-57 226.1 161 64.6
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 2.0e-57 226.1 155 63.9
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 2.6e-57 225.7 159 64.8
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 2.6e-57 225.7 161 60.9
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 5.8e-57 224.6 155 65.2
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 7.5e-57 224.2 161 64.0
FAN15G0772 Fragaria x ananassa HOM05D006336 ORTHO05D007819 7.5e-57 224.2 157 63.1
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 9.8e-57 223.8 155 63.9
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 1.3e-56 223.4 161 64.0
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 1.3e-56 223.4 161 63.4
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 1.3e-56 223.4 161 63.4
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 1.3e-56 223.4 161 63.4
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 1.3e-56 223.4 161 63.4
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 1.3e-56 223.4 161 63.4
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 2.9e-56 222.2 159 61.6
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 2.9e-56 222.2 159 62.3
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 4.9e-56 221.5 157 63.7
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 6.4e-56 221.1 157 65.0
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 6.4e-56 221.1 155 63.9
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 1.9e-55 219.5 161 63.4
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 1.9e-55 219.5 161 63.4
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 2.4e-55 219.2 159 62.3
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 2.4e-55 219.2 159 61.6
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 4.1e-55 218.4 159 62.9
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 9.2e-55 217.2 164 64.0
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 2.7e-54 215.7 157 61.8
Hund02606 Selenicereus undatus HOM05D006336 ORTHO05D007819 4.6e-54 214.9 163 60.7
Ah.11g048000 Amaranthus hybridus HOM05D006336 ORTHO05D007819 3.0e-53 212.2 151 62.3
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 1.9e-52 209.5 158 59.5
CDE05G3418 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 5.2e-50 201.4 154 60.4
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 3.6e-43 178.7 116 70.7
HPP92_019316 Vanilla planifolia HOM05D006336 ORTHO05D007819 1.4e-42 176.8 128 59.4
Dinv37442 Davidia involucrata HOM05D006336 ORTHO05D007819 2.3e-42 176.0 113 72.6
Nitab4.5_0008291g0020 Nicotiana tabacum HOM05D006336 ORTHO05D007819 4.4e-41 171.8 161 52.8
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 4.1e-39 165.2 158 49.4
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 5.4e-39 164.9 116 63.8
Pp3c1_38250 Physcomitrium patens HOM05D006336 ORTHO05D007819 1.0e-37 160.6 155 49.0
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 3.0e-37 159.1 146 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2113 Anthoceros agrestis HOM05D006336 ORTHO05D007819 5.1e-37 158.3 141 53.2
SMO351G0262 Selaginella moellendorffii HOM05D006336 ORTHO05D007819 6.6e-37 157.9 154 46.8
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 5.6e-36 154.8 105 66.7
CDE05G3496 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 1.7e-32 143.3 154 46.8
Cc00_g35650 Coffea canephora HOM05D006336 ORTHO05D007819 4.2e-31 138.7 68 97.1
Mapoly0124s0049 Marchantia polymorpha HOM05D006336 ORTHO05D007819 1.2e-30 137.1 131 49.6
Peaxi162Scf00014g01816 Petunia axillaris HOM05D006336 ORTHO05D007819 2.3e-29 132.9 98 65.3
CBR_g30757 Chara braunii HOM05D006336 ORTHO05D007819 1.0e-21 107.5 123 39.8
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 9.6e-20 100.9 135 40.0
Cre06.g278264 Chlamydomonas reinhardtii HOM05D006336 ORTHO05D007819 4.5e-17 92.0 126 36.5
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.4e-15 87.0 54 72.2
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 4.6e-14 82.0 59 64.4
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 1.1e-12 77.4 53 66.0
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 1.0e-08 64.3 102 39.2
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 2.9e-08 62.8 101 35.6
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 3.2e-07 59.3 101 34.7
Pp3c24_14070 Physcomitrium patens HOM05D005986 ORTHO05D007467 3.2e-07 59.3 99 34.3
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 4.2e-07 58.9 107 34.6
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 4.2e-07 58.9 101 35.6
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 4.2e-07 58.9 101 33.7
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 7.1e-07 58.2 86 41.9
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 7.1e-07 58.2 101 34.7
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 1.2e-06 57.4 101 34.7
Cc11_g14820 Coffea canephora HOM05D005986 ORTHO05D007467 1.6e-06 57.0 101 32.7
MCO06G181 Micromonas commoda HOM05D005986 ORTHO05D007467 1.6e-06 57.0 110 31.8
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 1.6e-06 57.0 73 38.4
HanXRQChr06g0175331 Helianthus annuus HOM05D005986 ORTHO05D007467 2.1e-06 56.6 101 31.7
Sabra03G0114800 Salix brachista HOM05D005986 ORTHO05D007467 2.1e-06 56.6 103 35.9
EL10Ac4g08348 Beta vulgaris HOM05D005986 ORTHO05D007467 2.7e-06 56.2 108 31.5
CiPaw.05G096500 Carya illinoinensis HOM05D005986 ORTHO05D007467 2.7e-06 56.2 71 36.6
AUR62042784 Chenopodium quinoa HOM05D005986 ORTHO05D007467 2.7e-06 56.2 107 31.8
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 3.5e-06 55.8 73 38.4
HanXRQChr17g0540591 Helianthus annuus HOM05D005986 ORTHO05D007467 3.5e-06 55.8 101 32.7
RcHm_v2.0_Chr4g0428161 Rosa chinensis HOM05D005986 ORTHO05D007467 4.6e-06 55.5 100 32.0
MSTRG.8073 Avicennia marina HOM05D005986 ORTHO05D007467 6.0e-06 55.1 71 36.6
AUR62019578 Chenopodium quinoa HOM05D005986 ORTHO05D007467 6.0e-06 55.1 107 31.8
Lalb_Chr16g0391881 Lupinus albus HOM05D005986 ORTHO05D007467 6.0e-06 55.1 99 32.3
PSO017G0169 Papaver somniferum HOM05D005986 ORTHO05D007467 6.0e-06 55.1 79 36.7
PSO478G1012 Papaver somniferum HOM05D005986 ORTHO05D007467 6.0e-06 55.1 79 36.7
Peaxi162Scf00097g01214 Petunia axillaris HOM05D005986 ORTHO05D007467 6.0e-06 55.1 73 37.0
ECA246G5024 Erigeron canadensis HOM05D005986 ORTHO05D007467 7.9e-06 54.7 96 35.4
SMO145G0091 Selaginella moellendorffii HOM05D005986 ORTHO05D007467 7.9e-06 54.7 125 28.8


User provided reference genes

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