Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04510 Coffea canephora HOM05D006336 ORTHO05D007819 8.0e-79 297.0 145 100.0
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 3.7e-76 288.1 145 96.6
Cc00_g23060 Coffea canephora HOM05D006336 ORTHO05D007819 4.9e-76 287.7 145 95.9
Cc08_g04540 Coffea canephora HOM05D006336 ORTHO05D007819 6.4e-76 287.3 145 95.9
Cc08_g04580 Coffea canephora HOM05D006336 ORTHO05D007819 3.2e-75 285.0 145 95.2
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 5.2e-62 241.1 143 75.5
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 7.1e-59 230.7 145 71.0
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 7.1e-59 230.7 143 70.6
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 2.1e-58 229.2 143 73.4
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 6.0e-58 227.6 145 67.6
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 1.7e-57 226.1 143 73.4
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 1.7e-57 226.1 142 70.4
Hma1.2p1_0262F.1_g105216 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 3.9e-57 224.9 143 72.7
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 3.9e-57 224.9 144 70.1
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 1.5e-56 223.0 143 69.9
Migut.A00484 Erythranthe guttata HOM05D006336 ORTHO05D007819 1.2e-55 219.9 143 67.1
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 2.8e-55 218.8 142 68.3
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 2.8e-55 218.8 143 67.8
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 3.6e-55 218.4 143 69.2
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 3.6e-55 218.4 143 69.2
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 6.2e-55 217.6 142 66.9
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 1.8e-54 216.1 142 67.6
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 1.8e-54 216.1 143 68.5
Lsat_1_v5_gn_6_74301 Lactuca sativa HOM05D006336 ORTHO05D007819 3.1e-54 215.3 143 67.1
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 6.8e-54 214.2 143 66.4
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 1.2e-53 213.4 143 65.7
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 2.0e-53 212.6 143 66.4
HanXRQChr03g0084651 Helianthus annuus HOM05D006336 ORTHO05D007819 2.0e-53 212.6 142 66.2
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 2.0e-53 212.6 143 66.4
DCAR_002185 Daucus carota HOM05D006336 ORTHO05D007819 3.4e-53 211.8 140 67.9
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 9.9e-53 210.3 142 66.2
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 1.3e-52 209.9 143 64.3
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 1.7e-52 209.5 145 64.8
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 2.9e-52 208.8 143 64.3
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 3.8e-52 208.4 140 65.7
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 3.8e-52 208.4 143 63.6
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 4.9e-52 208.0 143 65.0
PSO135G0459 Papaver somniferum HOM05D006336 ORTHO05D007819 6.4e-52 207.6 139 65.5
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 8.4e-52 207.2 145 64.8
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 1.1e-51 206.8 144 63.2
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 1.9e-51 206.1 143 62.2
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 1.9e-51 206.1 143 65.7
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 2.4e-51 205.7 145 60.7
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 3.2e-51 205.3 143 64.3
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 5.4e-51 204.5 143 63.6
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 1.2e-50 203.4 143 62.9
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 1.6e-50 203.0 143 62.9
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 2.1e-50 202.6 143 65.0
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 2.7e-50 202.2 143 62.9
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 2.7e-50 202.2 145 62.1
ECA240G3698 Erigeron canadensis HOM05D006336 ORTHO05D007819 6.0e-50 201.1 142 61.3
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 7.8e-50 200.7 138 63.8
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 7.8e-50 200.7 142 62.7
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 1.0e-49 200.3 144 62.5
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 1.0e-49 200.3 143 60.8
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 1.3e-49 199.9 142 62.7
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 1.3e-49 199.9 145 58.6
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 1.3e-49 199.9 143 60.8
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 1.7e-49 199.5 170 55.3
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 2.3e-49 199.1 145 62.1
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 2.3e-49 199.1 138 62.3
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 3.0e-49 198.7 143 64.3
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 3.9e-49 198.4 144 61.8
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 3.9e-49 198.4 144 61.8
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 3.9e-49 198.4 144 61.8
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 3.9e-49 198.4 144 61.8
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 3.9e-49 198.4 144 61.8
AUR62021599 Chenopodium quinoa HOM05D006336 ORTHO05D007819 3.9e-49 198.4 143 61.5
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 3.9e-49 198.4 143 61.5
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 3.9e-49 198.4 143 64.3
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 5.1e-49 198.0 144 61.8
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 6.6e-49 197.6 142 62.7
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 6.6e-49 197.6 143 60.1
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 8.7e-49 197.2 152 61.2
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 1.1e-48 196.8 173 55.5
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 1.1e-48 196.8 138 60.9
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 2.5e-48 195.7 145 59.3
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 3.3e-48 195.3 143 60.1
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 3.3e-48 195.3 142 61.3
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 7.3e-48 194.1 145 60.0
FAN15G0772 Fragaria x ananassa HOM05D006336 ORTHO05D007819 7.3e-48 194.1 143 59.4
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 9.6e-48 193.7 144 61.1
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 9.6e-48 193.7 144 61.1
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 9.6e-48 193.7 143 60.8
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 9.6e-48 193.7 136 61.8
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 1.6e-47 193.0 142 59.9
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 1.1e-46 190.3 142 59.2
Hund02606 Selenicereus undatus HOM05D006336 ORTHO05D007819 1.8e-46 189.5 142 57.7
Ah.11g048000 Amaranthus hybridus HOM05D006336 ORTHO05D007819 4.0e-46 188.3 134 61.9
CDE05G3418 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 2.0e-45 186.0 141 59.6
HPP92_019316 Vanilla planifolia HOM05D006336 ORTHO05D007819 3.3e-40 168.7 128 56.2
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 1.3e-36 156.8 100 69.0
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 6.4e-36 154.5 146 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2113 Anthoceros agrestis HOM05D006336 ORTHO05D007819 1.9e-35 152.9 141 50.4
Pp3c1_38250 Physcomitrium patens HOM05D006336 ORTHO05D007819 3.2e-35 152.1 131 51.9
Nitab4.5_0008291g0020 Nicotiana tabacum HOM05D006336 ORTHO05D007819 3.5e-34 148.7 143 50.3
SMO351G0262 Selaginella moellendorffii HOM05D006336 ORTHO05D007819 3.5e-34 148.7 140 47.9
Dinv37442 Davidia involucrata HOM05D006336 ORTHO05D007819 7.9e-34 147.5 100 68.0
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 8.7e-33 144.1 142 47.2
Cc00_g35650 Coffea canephora HOM05D006336 ORTHO05D007819 3.3e-32 142.1 68 100.0
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 9.0e-30 134.0 95 62.1
Peaxi162Scf00014g01816 Petunia axillaris HOM05D006336 ORTHO05D007819 1.3e-28 130.2 98 63.3
Mapoly0124s0049 Marchantia polymorpha HOM05D006336 ORTHO05D007819 1.7e-28 129.8 131 46.6
CDE05G3496 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 4.9e-28 128.3 141 44.7
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 1.1e-27 127.1 93 61.3
CBR_g30757 Chara braunii HOM05D006336 ORTHO05D007819 1.4e-19 100.1 123 36.6
Cre06.g278264 Chlamydomonas reinhardtii HOM05D006336 ORTHO05D007819 3.3e-16 89.0 126 34.9
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 2.2e-15 86.3 123 37.4
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 1.1e-11 73.9 59 55.9
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.6e-10 70.1 42 71.4
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 9.7e-08 60.8 102 36.3
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 1.7e-07 60.1 101 34.7
Pp3c24_14070 Physcomitrium patens HOM05D005986 ORTHO05D007467 4.8e-07 58.5 99 34.3
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 4.8e-07 58.5 41 65.9
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 1.4e-06 57.0 101 32.7
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 1.4e-06 57.0 101 31.7
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 5.3e-06 55.1 99 33.3
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 5.3e-06 55.1 101 32.7
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 5.3e-06 55.1 101 32.7
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 5.3e-06 55.1 101 32.7
MSTRG.8073 Avicennia marina HOM05D005986 ORTHO05D007467 6.9e-06 54.7 99 32.3
CiPaw.05G096500 Carya illinoinensis HOM05D005986 ORTHO05D007467 6.9e-06 54.7 99 31.3
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 6.9e-06 54.7 86 38.4
Sabra03G0114800 Salix brachista HOM05D005986 ORTHO05D007467 6.9e-06 54.7 103 34.0
THA.LOC104807194 Tarenaya hassleriana HOM05D005986 ORTHO05D007467 9.1e-06 54.3 101 31.7


User provided reference genes

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