Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04490 Coffea canephora HOM05D001765 ORTHO05D003527 2.0e-29 131.7 64 100.0
Cc07_g11660 Coffea canephora HOM05D001765 ORTHO05D003527 3.8e-25 117.5 58 96.6
vmacro17720 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 4.7e-23 110.5 63 77.8
vmacro22958 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 4.7e-23 110.5 63 77.8
Dinv05607 Davidia involucrata HOM05D001765 ORTHO05D003527 1.0e-22 109.4 58 82.8
Dinv10225 Davidia involucrata HOM05D001765 ORTHO05D003527 1.0e-22 109.4 58 82.8
Migut.H02511 Erythranthe guttata HOM05D001765 ORTHO05D003527 1.0e-22 109.4 58 86.2
Thecc.04G047100 Theobroma cacao HOM05D001765 ORTHO05D003527 1.8e-22 108.6 58 86.2
Actinidia19217 Actinidia chinensis HOM05D001765 ORTHO05D003527 3.0e-22 107.8 58 81.0
Nitab4.5_0000136g0160 Nicotiana tabacum HOM05D001765 ORTHO05D003527 3.0e-22 107.8 58 82.8
Nitab4.5_0009648g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 3.0e-22 107.8 58 82.8
PGR119G0836 Punica granatum HOM05D001765 ORTHO05D003527 5.2e-22 107.1 58 82.8
vmacro22966 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 5.2e-22 107.1 58 81.0
DCAR_025478 Daucus carota HOM05D001765 ORTHO05D003527 6.8e-22 106.7 58 84.5
Rhsim08G0122600 Rhododendron simsii HOM05D001765 ORTHO05D003527 6.8e-22 106.7 58 81.0
CiPaw.08G138100 Carya illinoinensis HOM05D001765 ORTHO05D003527 8.9e-22 106.3 58 81.0
Manes.02G222800 Manihot esculenta HOM05D001765 ORTHO05D003527 1.2e-21 105.9 58 82.8
Oeu002033.1 Olea europaea HOM05D001765 ORTHO05D003527 1.2e-21 105.9 58 81.0
Potri.005G118900 Populus trichocarpa HOM05D001765 ORTHO05D003527 1.5e-21 105.5 58 81.0
QL06p035070 Quercus lobata HOM05D001765 ORTHO05D003527 1.5e-21 105.5 58 81.0
Duzib147G0794 Durio zibethinus HOM05D001765 ORTHO05D003527 2.0e-21 105.1 58 81.0
Peaxi162Scf00207g01134 Petunia axillaris HOM05D001765 ORTHO05D003527 2.0e-21 105.1 58 79.3
Peaxi162Scf01385g00023 Petunia axillaris HOM05D001765 ORTHO05D003527 2.0e-21 105.1 58 79.3
SalBow8G1820 Salvia bowleyana HOM05D001765 ORTHO05D003527 2.6e-21 104.8 58 81.0
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 2.6e-21 104.8 58 81.0
CSS0038408 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 3.4e-21 104.4 57 78.9
CANSAT01G1346 Cannabis sativa HOM05D001765 ORTHO05D003527 3.4e-21 104.4 58 81.0
CsaV3_4G005440 Cucumis sativus L. HOM05D001765 ORTHO05D003527 5.7e-21 103.6 58 81.0
Gohir.D03G000300 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.7e-21 103.6 58 82.8
Gorai.003G000600 Gossypium raimondii HOM05D001765 ORTHO05D003527 5.7e-21 103.6 58 82.8
CDE04G0335 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 7.5e-21 103.2 58 81.0
Sabra05G0098000 Salix brachista HOM05D001765 ORTHO05D003527 7.5e-21 103.2 58 79.3
Cfa006911 Carpinus fangiana HOM05D001765 ORTHO05D003527 9.8e-21 102.8 58 77.6
MELO3C016404.2 Cucumis melo HOM05D001765 ORTHO05D003527 9.8e-21 102.8 58 79.3
Gohir.A07G233400 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.8e-21 102.8 58 82.8
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.7e-20 102.1 58 81.0
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.7e-20 102.1 58 81.0
Gorai.012G000100 Gossypium raimondii HOM05D001765 ORTHO05D003527 1.7e-20 102.1 58 81.0
GSVIVG01018876001 Vitis vinifera HOM05D001765 ORTHO05D003527 1.7e-20 102.1 58 75.9
Gohir.A10G243200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.2e-20 101.7 59 81.4
Gohir.D12G000200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.2e-20 101.7 58 81.0
FvH4_1g12530 Fragaria vesca HOM05D001765 ORTHO05D003527 2.9e-20 101.3 58 77.6
FAN19G2967 Fragaria x ananassa HOM05D001765 ORTHO05D003527 2.9e-20 101.3 58 77.6
FAN28G1354 Fragaria x ananassa HOM05D001765 ORTHO05D003527 2.9e-20 101.3 58 77.6
Peaxi162Scf00207g01135 Petunia axillaris HOM05D001765 ORTHO05D003527 3.7e-20 100.9 59 74.6
RcHm_v2.0_Chr2g0100461 Rosa chinensis HOM05D001765 ORTHO05D003527 4.9e-20 100.5 58 75.9
CDE07G0806 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 6.4e-20 100.1 58 77.6
Dinv40028 Davidia involucrata HOM05D001765 ORTHO05D003527 6.4e-20 100.1 56 80.4
Prupe.7G161600 Prunus persica HOM05D001765 ORTHO05D003527 6.4e-20 100.1 58 75.9
Aqoxy5G01550 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 8.3e-20 99.8 58 75.9
Gorai.010G246100 Gossypium raimondii HOM05D001765 ORTHO05D003527 8.3e-20 99.8 58 77.6
Haze_03845 Corylus avellana HOM05D001765 ORTHO05D003527 1.1e-19 99.4 56 76.8
Gorai.004G000500 Gossypium raimondii HOM05D001765 ORTHO05D003527 1.1e-19 99.4 58 79.3
THA.LOC104826037 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 1.4e-19 99.0 58 75.9
Gorai.009G456300 Gossypium raimondii HOM05D001765 ORTHO05D003527 1.8e-19 98.6 56 80.4
MD15G1252600 Malus domestica HOM05D001765 ORTHO05D003527 1.8e-19 98.6 58 75.9
Solyc02g062530.3 Solanum lycopersicum HOM05D001765 ORTHO05D003527 1.8e-19 98.6 58 74.1
Sopen02g013530 Solanum pennellii HOM05D001765 ORTHO05D003527 1.8e-19 98.6 58 74.1
Eucgr.A00850 Eucalyptus grandis HOM05D001765 ORTHO05D003527 2.4e-19 98.2 58 75.9
Lalb_Chr08g0235841 Lupinus albus HOM05D001765 ORTHO05D003527 3.2e-19 97.8 58 74.1
MD02G1139500 Malus domestica HOM05D001765 ORTHO05D003527 5.4e-19 97.1 58 74.1
HPP92_011573 Vanilla planifolia HOM05D001765 ORTHO05D003527 5.4e-19 97.1 58 74.1
Cfa010227 Carpinus fangiana HOM05D001765 ORTHO05D003527 9.2e-19 96.3 56 75.0
Gohir.A01G232040 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.2e-19 96.3 58 77.6
Gohir.A08G000008 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.2e-19 96.3 58 77.6
Gorai.007G380100 Gossypium raimondii HOM05D001765 ORTHO05D003527 9.2e-19 96.3 58 77.6
Sed0024924 Sechium edule HOM05D001765 ORTHO05D003527 9.2e-19 96.3 55 74.5
arahy.Tifrunner.gnm1.ann1.IX6XHP Arachis hypogaea HOM05D001765 ORTHO05D003527 1.2e-18 95.9 58 75.9
unitig_899.g14639 Utricularia gibba HOM05D001765 ORTHO05D003527 1.2e-18 95.9 58 72.4
Gohir.D10G000101 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.0e-18 95.1 58 75.9
Aa31LG11G8000 Aethionema arabicum HOM05D001765 ORTHO05D003527 2.7e-18 94.7 53 77.4
Thhalv10005097m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 2.7e-18 94.7 53 77.4
Sp2g19750 Schrenkiella parvula HOM05D001765 ORTHO05D003527 2.7e-18 94.7 53 77.4
SpUn0021_0100 Schrenkiella parvula HOM05D001765 ORTHO05D003527 2.7e-18 94.7 53 77.4
VMungo0647G1062 Vigna mungo HOM05D001765 ORTHO05D003527 3.5e-18 94.4 58 72.4
arahy.Tifrunner.gnm1.ann1.86P1YE Arachis hypogaea HOM05D001765 ORTHO05D003527 4.6e-18 94.0 58 72.4
arahy.Tifrunner.gnm1.ann1.CUK8Y6 Arachis hypogaea HOM05D001765 ORTHO05D003527 4.6e-18 94.0 58 72.4
Gorai.006G275100 Gossypium raimondii HOM05D001765 ORTHO05D003527 4.6e-18 94.0 58 75.9
BcaB07g34155 Brassica carinata HOM05D001765 ORTHO05D003527 5.9e-18 93.6 53 75.5
Carub.0008s0929 Capsella rubella HOM05D001765 ORTHO05D003527 5.9e-18 93.6 53 75.5
TWI09G0332 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 5.9e-18 93.6 58 77.6
Atru.chr3.680 Acer truncatum HOM05D001765 ORTHO05D003527 7.8e-18 93.2 53 79.2
Atru.chr3.726 Acer truncatum HOM05D001765 ORTHO05D003527 7.8e-18 93.2 53 79.2
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 7.8e-18 93.2 53 75.5
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 7.8e-18 93.2 53 75.5
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 7.8e-18 93.2 53 75.5
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 7.8e-18 93.2 53 75.5
Glyma.14G008500 Glycine max HOM05D001765 ORTHO05D003527 7.8e-18 93.2 58 72.4
Gohir.D04G192700 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.0e-17 92.8 58 75.9
AL8G23120 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 1.3e-17 92.4 52 76.9
AT5G49410 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 1.3e-17 92.4 52 76.9
arahy.Tifrunner.gnm1.ann1.WC8DZD Arachis hypogaea HOM05D001765 ORTHO05D003527 1.3e-17 92.4 58 70.7
ClCG07G008720 Citrullus lanatus HOM05D001765 ORTHO05D003527 1.3e-17 92.4 62 69.4
CARHR182120 Cardamine hirsuta HOM05D001765 ORTHO05D003527 2.3e-17 91.7 52 76.9
MBI18_g05082_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 2.3e-17 91.7 52 76.9
ATR1125G025 Amborella trichopoda HOM05D001765 ORTHO05D003527 3.0e-17 91.3 49 81.6
TWI73G1042 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 3.0e-17 91.3 58 75.9
MBI10_g00746_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 3.9e-17 90.9 56 73.2
Phvul.008G284700 Phaseolus vulgaris HOM05D001765 ORTHO05D003527 3.9e-17 90.9 58 70.7
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.0e-17 90.5 56 75.0
arahy.Tifrunner.gnm1.ann1.EZ0MZE Arachis hypogaea HOM05D001765 ORTHO05D003527 6.6e-17 90.1 58 69.0
arahy.Tifrunner.gnm1.ann1.M20B87 Arachis hypogaea HOM05D001765 ORTHO05D003527 6.6e-17 90.1 58 69.0
TPR.G1302 Trifolium pratense HOM05D001765 ORTHO05D003527 1.5e-16 89.0 58 70.7
Zm00001eb314680 Zea mays HOM05D001765 ORTHO05D003527 1.5e-16 89.0 58 70.7
Psat2g004640 Pisum sativum HOM05D001765 ORTHO05D003527 3.3e-16 87.8 58 70.7
Ca_06451_v3 Cicer arietinum L. HOM05D001765 ORTHO05D003527 7.3e-16 86.7 58 69.0
Lj1g0003490 Lotus japonicus HOM05D001765 ORTHO05D003527 7.3e-16 86.7 58 67.2
Medtr5g097230 Medicago truncatula HOM05D001765 ORTHO05D003527 7.3e-16 86.7 58 69.0
Cfa010228 Carpinus fangiana HOM05D001765 ORTHO05D003527 1.2e-15 85.9 47 78.7
Hund05221 Selenicereus undatus HOM05D001765 ORTHO05D003527 1.6e-15 85.5 49 75.5
EL10Ac1g02248 Beta vulgaris HOM05D001765 ORTHO05D003527 2.1e-15 85.1 60 70.0
Os08g0360000 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 2.8e-15 84.7 58 63.8
HanXRQChr09g0261241 Helianthus annuus HOM05D001765 ORTHO05D003527 1.4e-14 82.4 58 65.5
Lsat_1_v5_gn_4_151821 Lactuca sativa HOM05D001765 ORTHO05D003527 1.4e-14 82.4 58 65.5
ECA232G4044 Erigeron canadensis HOM05D001765 ORTHO05D003527 3.1e-14 81.3 58 63.8
Ah.00g000090 Amaranthus hybridus HOM05D001765 ORTHO05D003527 1.5e-13 79.0 60 65.0
Cpa.g.sc6.177 Carica papaya HOM05D001765 ORTHO05D003527 1.5e-13 79.0 42 81.0
SEGI_06712 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 9.8e-13 76.3 57 52.6
Actinidia26093 Actinidia chinensis HOM05D001765 ORTHO05D003527 1.3e-12 75.9 42 76.2
PGSC0003DMG400015496 Solanum tuberosum HOM05D001765 ORTHO05D003527 1.3e-12 75.9 42 76.2
TAR375G0793 Trochodendron aralioides HOM05D001765 ORTHO05D003527 5.6e-08 60.5 54 48.1
vmacro11471 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 5.6e-08 60.5 52 46.2
Dinv12396 Davidia involucrata HOM05D001765 ORTHO05D003527 7.3e-08 60.1 54 48.1
Hma1.2p1_0436F.1_g152890 Hydrangea macrophylla HOM05D001765 ORTHO05D003527 7.3e-08 60.1 55 47.3
CSS0000240 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 1.2e-07 59.3 52 46.2
Nn1g00491 Nelumbo nucifera HOM05D001765 ORTHO05D003527 1.6e-07 58.9 60 45.0
DCAR_019220 Daucus carota HOM05D001765 ORTHO05D003527 6.2e-07 57.0 51 43.1
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.1e-07 56.6 56 42.9
Actinidia22239 Actinidia chinensis HOM05D001765 ORTHO05D003527 1.1e-06 56.2 52 42.3
Cc08_g05160 Coffea canephora HOM05D001765 ORTHO05D003527 1.4e-06 55.8 54 44.4
HanXRQChr11g0325551 Helianthus annuus HOM05D001765 ORTHO05D003527 1.8e-06 55.5 58 46.6
PGR031G0625 Punica granatum HOM05D001765 ORTHO05D003527 4.0e-06 54.3 52 42.3
ATR0579G141 Amborella trichopoda HOM05D001765 ORTHO05D003527 5.2e-06 53.9 53 45.3
Lalb_Chr10g0093061 Lupinus albus HOM05D001765 ORTHO05D003527 5.2e-06 53.9 56 50.0
Eucgr.D02536 Eucalyptus grandis HOM05D001765 ORTHO05D003527 6.8e-06 53.5 52 42.3


User provided reference genes

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