Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 1.7e-91 339.3 171 100.0
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 3.2e-50 202.2 180 64.4
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 2.7e-49 199.1 176 65.9
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 6.0e-49 198.0 169 66.9
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 1.0e-48 197.2 169 66.9
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 1.3e-48 196.8 169 65.7
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 5.6e-47 191.4 171 62.0
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 7.3e-47 191.0 173 63.0
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 9.6e-47 190.7 174 64.9
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 2.1e-46 189.5 185 58.9
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 4.9e-43 178.3 174 59.2
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 8.4e-43 177.6 187 55.6
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 2.4e-42 176.0 175 60.0
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 5.4e-42 174.9 174 58.0
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 1.3e-40 170.2 180 55.6
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 2.4e-37 159.5 173 57.2
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 5.3e-37 158.3 94 85.1
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 1.5e-36 156.8 172 55.8
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 5.8e-36 154.8 173 53.2
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 9.9e-36 154.1 184 50.0
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 1.7e-35 153.3 178 50.6
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 8.4e-35 151.0 113 70.8
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 5.4e-34 148.3 171 52.0
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 5.4e-34 148.3 169 52.1
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 7.1e-34 147.9 172 54.7
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 1.2e-33 147.1 183 51.9
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 1.6e-33 146.7 172 54.1
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 2.7e-33 146.0 173 50.9
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 1.0e-32 144.1 169 52.1
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 1.0e-32 144.1 169 52.1
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 1.0e-32 144.1 174 52.3
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 1.3e-32 143.7 176 51.7
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 1.7e-32 143.3 254 41.7
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 3.9e-32 142.1 176 52.8
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 6.6e-32 141.4 176 49.4
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 6.6e-32 141.4 176 49.4
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 6.6e-32 141.4 172 51.7
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 1.5e-31 140.2 168 50.6
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 1.9e-31 139.8 210 45.2
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 1.9e-31 139.8 176 52.3
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 2.5e-31 139.4 176 52.8
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 4.3e-31 138.7 172 54.1
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 4.3e-31 138.7 177 49.7
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 4.3e-31 138.7 172 51.2
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 4.3e-31 138.7 145 55.9
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 7.3e-31 137.9 169 50.9
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 7.3e-31 137.9 172 50.6
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 1.3e-30 137.1 173 48.0
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 1.6e-30 136.7 172 50.6
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 1.6e-30 136.7 172 50.6
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 2.1e-30 136.3 173 52.0
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 2.8e-30 136.0 172 50.0
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 2.8e-30 136.0 168 54.2
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 2.8e-30 136.0 171 52.0
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 3.6e-30 135.6 192 46.4
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 6.2e-30 134.8 177 46.3
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 8.1e-30 134.4 178 50.6
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 8.1e-30 134.4 97 71.1
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 1.1e-29 134.0 171 50.3
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 1.4e-29 133.7 174 48.9
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 5.3e-29 131.7 174 47.7
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 6.9e-29 131.3 171 50.9
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 6.9e-29 131.3 171 50.9
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 5.8e-28 128.3 181 48.6
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 7.6e-28 127.9 175 45.1
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 1.3e-27 127.1 98 68.4
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 1.3e-27 127.1 174 47.7
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 1.3e-27 127.1 171 49.1
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 3.8e-27 125.6 175 44.6
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 1.4e-26 123.6 175 47.4
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 1.9e-26 123.2 170 48.2
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 4.2e-26 122.1 103 65.0
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 9.3e-26 120.9 77 77.9
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 9.3e-26 120.9 77 77.9
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 9.3e-26 120.9 171 49.7
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 1.2e-25 120.6 171 48.5
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 2.1e-25 119.8 173 47.4
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 7.9e-25 117.9 91 70.3
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 7.9e-25 117.9 94 68.1
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 1.3e-24 117.1 150 50.0
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 2.3e-24 116.3 185 44.3
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 3.0e-24 115.9 178 43.8
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 3.7e-22 109.0 142 47.9
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 8.1e-22 107.8 186 41.4
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 3.1e-21 105.9 65 78.5
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 3.1e-21 105.9 94 59.6
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 5.3e-21 105.1 146 47.9
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 9.0e-21 104.4 178 41.0
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 1.2e-20 104.0 173 45.1
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 3.4e-20 102.4 170 42.9
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 3.4e-20 102.4 188 43.6
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 5.8e-20 101.7 169 41.4
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 1.7e-19 100.1 171 40.9
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.7e-19 100.1 170 41.8
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.7e-19 100.1 171 40.9
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.2e-19 99.8 171 40.9
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 6.5e-19 98.2 169 43.2
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 9.3e-18 94.4 148 41.2
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 1.6e-17 93.6 64 68.8
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 2.1e-17 93.2 179 40.8
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 4.6e-17 92.0 144 41.0
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 4.6e-17 92.0 181 40.3
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 1.3e-16 90.5 55 78.2
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 3.9e-16 89.0 168 41.7
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 3.9e-16 89.0 70 64.3
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 6.7e-16 88.2 70 61.4
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 2.5e-15 86.3 145 40.7
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 1.6e-14 83.6 149 40.9
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 8.2e-14 81.3 64 62.5
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 4.5e-12 75.5 70 57.1
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 8.4e-11 71.2 118 40.7
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 8.4e-11 71.2 45 68.9
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 1.9e-10 70.1 75 52.0
SGA_v2.0_scaffold111G31380 Striga asiatica HOM05D006875 ORTHO05D008416 2.5e-10 69.7 145 40.7
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 2.3e-08 63.2 70 50.0
DCAR_004255 Daucus carota HOM05D049898 ORTHO05D008416 6.7e-08 61.6 111 45.0


User provided reference genes

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