Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04070 Coffea canephora HOM05D007271 ORTHO05D009217 0.0e+00 1087.8 552 100.0
CAN.G773.8 Capsicum annuum HOM05D007271 ORTHO05D009217 1.3e-190 670.2 551 61.9
Dinv29036 Davidia involucrata HOM05D007271 ORTHO05D009217 3.0e-190 669.1 519 64.4
Nitab4.5_0005761g0060 Nicotiana tabacum HOM05D007271 ORTHO05D009217 1.9e-189 666.4 546 60.6
PGSC0003DMG400035874 Solanum tuberosum HOM05D007271 ORTHO05D009217 7.3e-189 664.5 553 61.7
Oeu061071.1 Olea europaea HOM05D007271 ORTHO05D009217 1.6e-188 663.3 522 64.2
Sopen08g024690 Solanum pennellii HOM05D007271 ORTHO05D009217 3.6e-188 662.1 553 61.5
Nitab4.5_0000109g0130 Nicotiana tabacum HOM05D007271 ORTHO05D009217 2.3e-187 659.4 546 60.1
Solyc08g076040.2 Solanum lycopersicum HOM05D007271 ORTHO05D009217 6.8e-187 657.9 552 60.7
Peaxi162Scf00185g01619 Petunia axillaris HOM05D007271 ORTHO05D009217 4.9e-185 651.7 527 62.0
Hma1.2p1_0635F.1_g193160 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 1.9e-184 649.8 569 58.2
Peaxi162Scf00408g00227 Petunia axillaris HOM05D007271 ORTHO05D009217 1.9e-184 649.8 552 59.2
Lj8A323T49 Lonicera japonica HOM05D007271 ORTHO05D009217 8.6e-182 641.0 548 59.1
SalBow4G2871 Salvia bowleyana HOM05D007271 ORTHO05D009217 4.4e-178 628.6 531 58.6
Oeu001193.1 Olea europaea HOM05D007271 ORTHO05D009217 2.3e-174 616.3 530 57.2
DCAR_004256 Daucus carota HOM05D007271 ORTHO05D009217 5.8e-170 601.7 523 57.0
DCAR_008194 Daucus carota HOM05D007271 ORTHO05D009217 7.6e-170 601.3 514 57.8
TAR375G0504 Trochodendron aralioides HOM05D007271 ORTHO05D009217 2.9e-169 599.4 530 56.2
PGR042G3154 Punica granatum HOM05D007271 ORTHO05D009217 6.2e-164 581.6 509 53.0
GSVIVG01026362001 Vitis vinifera HOM05D007271 ORTHO05D009217 5.3e-163 578.6 521 54.9
CiPaw.12G070300 Carya illinoinensis HOM05D007271 ORTHO05D009217 9.0e-163 577.8 533 54.4
Haze_08102 Corylus avellana HOM05D007271 ORTHO05D009217 7.6e-162 574.7 505 56.6
FvH4_5g23600 Fragaria vesca HOM05D007271 ORTHO05D009217 5.4e-160 568.5 521 54.7
FAN18G2511 Fragaria x ananassa HOM05D007271 ORTHO05D009217 5.4e-160 568.5 521 54.7
SalBow8G4630 Salvia bowleyana HOM05D007271 ORTHO05D009217 1.2e-159 567.4 522 54.6
FAN13G0287 Fragaria x ananassa HOM05D007271 ORTHO05D009217 2.1e-159 566.6 521 54.3
Duzib068G0217 Durio zibethinus HOM05D007271 ORTHO05D009217 1.7e-158 563.5 539 53.1
Prupe.5G024200 Prunus persica HOM05D007271 ORTHO05D009217 1.7e-158 563.5 520 55.4
FAN08G2102 Fragaria x ananassa HOM05D007271 ORTHO05D009217 2.3e-158 563.1 521 54.1
FAN18G2097 Fragaria x ananassa HOM05D007271 ORTHO05D009217 2.3e-158 563.1 521 54.3
Lsat_1_v5_gn_3_20940 Lactuca sativa HOM05D007271 ORTHO05D009217 2.3e-158 563.1 532 53.6
Cfa012560 Carpinus fangiana HOM05D007271 ORTHO05D009217 2.5e-157 559.7 516 54.1
MD00G1000300 Malus domestica HOM05D007271 ORTHO05D009217 9.6e-157 557.8 510 54.5
RcHm_v2.0_Chr7g0212901 Rosa chinensis HOM05D007271 ORTHO05D009217 9.6e-157 557.8 516 54.7
Gorai.004G180600 Gossypium raimondii HOM05D007271 ORTHO05D009217 1.6e-156 557.0 547 51.9
Thecc.03G314300 Theobroma cacao HOM05D007271 ORTHO05D009217 1.4e-155 553.9 514 54.3
Eucgr.E01257 Eucalyptus grandis HOM05D007271 ORTHO05D009217 3.1e-155 552.7 495 53.9
HanXRQChr17g0537681 Helianthus annuus HOM05D007271 ORTHO05D009217 5.3e-155 552.0 539 52.7
Gohir.D08G173300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 4.5e-154 548.9 547 51.4
Manes.17G011200 Manihot esculenta HOM05D007271 ORTHO05D009217 9.9e-154 547.7 525 52.6
Aqoxy7G00878 Aquilegia oxysepala HOM05D007271 ORTHO05D009217 2.2e-153 546.6 505 53.9
Gohir.D12G206700 Gossypium hirsutum HOM05D007271 ORTHO05D009217 4.9e-153 545.4 517 53.8
Ciclev10003885m.g Citrus clementina HOM05D007271 ORTHO05D009217 1.1e-152 544.3 530 51.9
Gorai.008G222100 Gossypium raimondii HOM05D007271 ORTHO05D009217 7.1e-152 541.6 555 51.9
CANSAT21G2130 Cannabis sativa HOM05D007271 ORTHO05D009217 2.7e-151 539.7 522 53.6
Potri.001G133700 Populus trichocarpa HOM05D007271 ORTHO05D009217 6.0e-151 538.5 515 52.8
Gohir.A12G204300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 7.9e-151 538.1 538 51.9
unitig_748.g8136 Utricularia gibba HOM05D007271 ORTHO05D009217 3.0e-150 536.2 540 50.7
MBI04_g36029_MAGBIO Magnolia biondii HOM05D007271 ORTHO05D009217 6.7e-150 535.0 515 50.7
Atru.chr6.1575 Acer truncatum HOM05D007271 ORTHO05D009217 1.9e-149 533.5 526 51.1
TWI14G0446 Tripterygium wilfordii HOM05D007271 ORTHO05D009217 1.3e-148 530.8 506 51.4
unitig_747.g21928 Utricularia gibba HOM05D007271 ORTHO05D009217 4.8e-148 528.9 519 51.3
Gohir.A08G152200 Gossypium hirsutum HOM05D007271 ORTHO05D009217 5.3e-147 525.4 536 50.0
Actinidia14763 Actinidia chinensis HOM05D007271 ORTHO05D009217 3.4e-146 522.7 542 49.8
Eucgr.D02621 Eucalyptus grandis HOM05D007271 ORTHO05D009217 8.4e-145 518.1 517 49.7
Hma1.2p1_1486F.1_g286550 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 2.5e-144 516.5 479 55.3
Lalb_Chr05g0215551 Lupinus albus HOM05D007271 ORTHO05D009217 4.2e-144 515.8 539 50.6
Cpa.g.sc104.82 Carica papaya HOM05D007271 ORTHO05D009217 3.9e-142 509.2 526 50.2
VMungo1215G2496 Vigna mungo HOM05D007271 ORTHO05D009217 3.1e-139 499.6 507 50.7
Ca_25147_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 5.3e-139 498.8 506 50.8
ClCG10G001150 Citrullus lanatus HOM05D007271 ORTHO05D009217 1.2e-138 497.7 514 49.8
Glyma.01G009700 Glycine max HOM05D007271 ORTHO05D009217 2.0e-138 496.9 508 51.2
Lj4g0015364 Lotus japonicus HOM05D007271 ORTHO05D009217 3.8e-137 492.7 498 50.0
Medtr5g027460 Medicago truncatula HOM05D007271 ORTHO05D009217 8.5e-137 491.5 506 50.0
Lj2g0009393 Lotus japonicus HOM05D007271 ORTHO05D009217 2.7e-135 486.5 507 48.9
Migut.A00579 Erythranthe guttata HOM05D007271 ORTHO05D009217 4.6e-135 485.7 500 51.2
Psat2g139720 Pisum sativum HOM05D007271 ORTHO05D009217 5.1e-134 482.3 521 47.8
MELO3C013807.2 Cucumis melo HOM05D007271 ORTHO05D009217 2.8e-132 476.5 514 47.9
CsaV3_3G001170 Cucumis sativus L. HOM05D007271 ORTHO05D009217 9.0e-131 471.5 513 47.8
ECA246G0509 Erigeron canadensis HOM05D007271 ORTHO05D009217 4.5e-130 469.2 553 45.9
PGR031G3520 Punica granatum HOM05D007271 ORTHO05D009217 7.7e-130 468.4 466 49.8
Psat4g109960 Pisum sativum HOM05D007271 ORTHO05D009217 4.6e-127 459.1 529 46.7
Medtr8g071050 Medicago truncatula HOM05D007271 ORTHO05D009217 1.5e-125 454.1 477 48.0
arahy.Tifrunner.gnm1.ann1.3Y0Q41 Arachis hypogaea HOM05D007271 ORTHO05D009217 3.3e-125 453.0 550 44.7
Glyma.16G103000 Glycine max HOM05D007271 ORTHO05D009217 9.7e-125 451.4 488 46.9
PSO717G0049 Papaver somniferum HOM05D007271 ORTHO05D009217 1.3e-124 451.1 503 46.3
TPR.G28964 Trifolium pratense HOM05D007271 ORTHO05D009217 6.9e-123 445.3 516 45.5
QL12p000436 Quercus lobata HOM05D007271 ORTHO05D009217 4.5e-122 442.6 437 53.1
arahy.Tifrunner.gnm1.ann1.CI81A0 Arachis hypogaea HOM05D007271 ORTHO05D009217 7.7e-122 441.8 511 46.2
Sed0019673 Sechium edule HOM05D007271 ORTHO05D009217 2.2e-121 440.3 520 47.3
Nitab4.5_0000809g0020 Nicotiana tabacum HOM05D007271 ORTHO05D009217 8.5e-121 438.3 357 63.0
Phvul.003G273200 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 8.5e-121 438.3 509 45.4
Phvul.002G132600 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 1.9e-120 437.2 444 50.7
VMungo0251G3497 Vigna mungo HOM05D007271 ORTHO05D009217 2.1e-119 433.7 479 46.3
Zm00001eb268890 Zea mays HOM05D007271 ORTHO05D009217 1.1e-115 421.4 505 44.8
Os06g0113900 Oryza sativa ssp. japonica HOM05D007271 ORTHO05D009217 1.4e-115 421.0 489 45.2
FAN04G0635 Fragaria x ananassa HOM05D007271 ORTHO05D009217 5.0e-97 359.4 421 45.4
ATR0829G091 Amborella trichopoda HOM05D007271 ORTHO05D009217 2.6e-93 347.1 407 45.9
unitig_32.g10968 Utricularia gibba HOM05D007271 ORTHO05D009217 6.6e-73 279.3 426 38.3
SEGI_35026 Sequoiadendron giganteum HOM05D007271 ORTHO05D009217 8.6e-73 278.9 525 31.6
Ciclev10003404m.g Citrus clementina HOM05D007271 ORTHO05D009217 6.0e-66 256.1 528 33.0
HanXRQChr06g0172971 Helianthus annuus HOM05D007271 ORTHO05D009217 4.3e-56 223.4 179 59.8
HanXRQChr06g0172981 Helianthus annuus HOM05D007271 ORTHO05D009217 1.5e-48 198.4 188 46.8
TPR.G9088 Trifolium pratense HOM05D007271 ORTHO05D009217 1.2e-42 178.7 177 52.0
TPR.G9092 Trifolium pratense HOM05D007271 ORTHO05D009217 3.2e-27 127.5 108 54.6
Oeu061072.1 Olea europaea HOM05D007271 ORTHO05D009217 1.1e-22 112.5 111 54.1
Ca_22492_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 1.4e-22 112.1 112 44.6
TPR.G34495 Trifolium pratense HOM05D007271 ORTHO05D009217 2.5e-19 101.3 109 43.1
COL.COLO4_16886 Corchorus olitorius HOM05D007271 ORTHO05D009217 7.2e-19 99.8 120 42.5
QL12p000442 Quercus lobata HOM05D007271 ORTHO05D009217 7.2e-19 99.8 117 42.7
COL.COLO4_16884 Corchorus olitorius HOM05D007271 ORTHO05D009217 2.1e-18 98.2 97 53.6
TPR.G8637 Trifolium pratense HOM05D007271 ORTHO05D009217 8.7e-17 92.8 107 43.9
arahy.Tifrunner.gnm1.ann1.RGNF9W Arachis hypogaea HOM05D007271 ORTHO05D009217 2.4e-14 84.7 101 43.6
arahy.Tifrunner.gnm1.ann1.WVYD0V Arachis hypogaea HOM05D007271 ORTHO05D009217 2.4e-14 84.7 101 43.6
PSO675G5865 Papaver somniferum HOM05D007271 ORTHO05D009217 5.9e-13 80.1 112 38.4
ATR0829G132 Amborella trichopoda HOM05D007271 ORTHO05D009217 6.7e-09 66.6 86 39.5


User provided reference genes

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