Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.1e-287 992.6 524 100.0
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.7e-209 732.3 534 74.3
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 3.5e-209 731.9 546 73.6
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.5e-207 726.5 524 75.0
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 3.3e-207 725.3 524 74.8
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 3.6e-206 721.8 533 73.0
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 6.2e-206 721.1 480 79.8
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 3.1e-205 718.8 532 74.1
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.5e-204 716.5 532 72.7
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.5e-204 716.5 535 72.9
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 2.0e-204 716.1 443 83.3
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 2.0e-204 716.1 531 72.5
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.6e-204 715.7 515 75.0
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 5.8e-204 714.5 454 82.6
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 8.4e-203 710.7 535 72.7
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.9e-202 709.5 455 81.8
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 3.2e-202 708.8 453 82.1
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 3.2e-202 708.8 527 73.2
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 9.3e-202 707.2 469 78.5
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 6.0e-201 704.5 474 78.1
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 1.5e-199 699.9 484 78.1
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 3.3e-199 698.7 459 80.4
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 4.3e-199 698.4 526 73.0
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 5.6e-199 698.0 534 70.8
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 7.4e-199 697.6 436 83.3
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.6e-198 696.4 454 80.8
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.6e-198 696.4 534 70.6
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 2.1e-198 696.0 443 82.4
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.7e-198 695.3 514 73.0
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.7e-198 695.3 529 72.6
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 4.8e-198 694.9 532 71.2
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 8.1e-198 694.1 528 72.2
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 8.1e-198 694.1 483 76.4
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 6.9e-197 691.0 521 72.2
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 9.0e-197 690.6 444 80.2
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 3.4e-196 688.7 537 70.8
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 4.5e-196 688.3 445 82.7
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.8e-196 688.0 470 76.8
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 7.6e-196 687.6 530 70.9
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.0e-195 687.2 532 70.1
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.3e-195 686.8 475 76.0
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.2e-195 686.0 531 70.8
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 3.8e-195 685.3 529 71.1
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 6.5e-195 684.5 446 80.3
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.5e-195 684.5 528 71.8
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 8.4e-195 684.1 444 81.1
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 8.4e-195 684.1 481 75.3
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 8.4e-195 684.1 526 70.9
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 1.4e-194 683.3 444 80.9
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.4e-194 683.3 443 79.5
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.4e-194 683.3 463 76.9
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.9e-194 682.9 473 77.2
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 2.5e-194 682.6 492 74.4
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 3.2e-194 682.2 530 70.9
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 4.2e-194 681.8 496 75.0
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 4.2e-194 681.8 444 80.6
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 5.5e-194 681.4 444 80.6
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 5.5e-194 681.4 444 80.6
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 7.1e-194 681.0 531 70.8
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 9.3e-194 680.6 528 71.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 2.1e-193 679.5 532 71.1
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 2.1e-193 679.5 469 77.4
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 2.1e-193 679.5 433 82.4
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 3.5e-193 678.7 492 74.0
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 3.5e-193 678.7 485 75.9
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 3.5e-193 678.7 448 78.6
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.6e-193 678.3 485 75.9
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 7.9e-193 677.6 524 72.3
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.0e-192 677.2 535 68.4
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 1.3e-192 676.8 443 80.1
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 3.0e-192 675.6 519 69.9
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.0e-192 675.6 507 71.8
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.1e-191 673.7 465 77.0
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 1.9e-191 672.9 526 70.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.9e-191 672.9 523 70.2
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.3e-190 670.2 540 68.9
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.6e-190 669.8 444 78.8
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.6e-190 669.8 488 73.4
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.6e-190 669.8 440 79.5
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.8e-190 669.1 521 69.5
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 3.1e-189 665.6 514 70.2
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 5.9e-188 661.4 456 75.4
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.7e-187 659.8 535 67.9
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 2.9e-187 659.1 536 67.2
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 6.5e-187 657.9 443 78.6
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 8.5e-187 657.5 534 68.9
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.1e-186 657.1 404 84.9
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.9e-186 656.4 478 73.8
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.5e-186 656.0 443 79.0
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 3.2e-186 655.6 465 75.1
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 5.5e-186 654.8 406 82.3
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 7.2e-186 654.4 517 70.0
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 7.2e-186 654.4 517 70.0
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 2.7e-185 652.5 445 76.4
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.3e-184 649.4 405 82.5
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 3.0e-184 649.0 420 81.7
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.1e-183 647.1 449 75.1
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.6e-182 643.3 525 66.3
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 8.2e-182 641.0 432 76.4
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.2e-180 637.1 451 73.8
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 2.6e-180 636.0 416 80.0
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.3e-179 633.6 449 73.9
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 8.8e-176 620.9 465 71.2
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.1e-175 620.5 464 71.8
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.1e-173 614.0 442 72.9
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.1e-173 612.5 445 71.9
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 5.3e-173 611.7 434 74.4
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 7.7e-172 607.8 536 64.7
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.9e-171 605.9 422 78.9
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 6.5e-171 604.7 446 72.6
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 5.5e-170 601.7 417 72.7
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 6.7e-168 594.7 485 67.4
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 2.9e-163 579.3 445 73.0
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 2.3e-152 543.1 434 65.9
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 2.3e-152 543.1 434 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 7.0e-141 505.0 424 61.8
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.5e-140 502.7 416 62.5
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.8e-137 493.0 486 56.0
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.6e-137 492.7 376 72.6
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 2.2e-134 483.4 377 67.1
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 3.5e-132 476.1 379 68.3
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.3e-123 447.6 365 64.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 2.8e-105 386.7 230 88.3
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 5.1e-99 365.9 424 48.8
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.6e-95 353.6 426 49.8
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.7e-84 317.0 216 75.0
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.0e-83 315.1 376 52.7
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 7.1e-77 292.4 415 42.4
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 4.1e-72 276.6 185 82.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 4.2e-69 266.5 386 38.6
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 3.0e-67 260.4 156 89.7
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.9e-66 257.7 430 35.1
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 9.7e-66 255.4 216 63.0
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.6e-60 238.0 400 37.2
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 5.7e-58 229.6 453 38.6
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 3.8e-54 216.9 162 70.4
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 2.8e-49 200.7 286 45.5
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.2e-41 174.5 126 67.5
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.5e-37 161.8 131 67.2
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.9e-29 134.8 127 61.4
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 4.4e-26 123.6 100 64.0
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 7.5e-26 122.9 86 70.9
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.5e-23 114.0 98 63.3
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 7.8e-23 112.8 97 67.0
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.9e-16 91.7 384 24.0
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.3e-11 74.7 67 65.7
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.2e-10 72.4 232 28.0
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 1.3e-09 68.9 426 23.7


User provided reference genes

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