Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03770 Coffea canephora HOM05D001055 ORTHO05D000867 2.5e-37 158.3 81 100.0
Cc02_g33650 Coffea canephora HOM05D001055 ORTHO05D000867 2.5e-29 131.7 85 84.7
Oeu023742.1 Olea europaea HOM05D001055 ORTHO05D000867 7.0e-24 113.6 85 71.8
Nitab4.5_0001643g0040 Nicotiana tabacum HOM05D001055 ORTHO05D000867 3.5e-23 111.3 82 68.3
SalBow3G0628 Salvia bowleyana HOM05D001055 ORTHO05D000867 4.6e-23 110.9 82 70.7
Dinv40268 Davidia involucrata HOM05D001055 ORTHO05D000867 5.9e-23 110.5 85 69.4
Solyc01g098800.4 Solanum lycopersicum HOM05D001055 ORTHO05D000867 5.9e-23 110.5 82 70.7
Sopen01g042340 Solanum pennellii HOM05D001055 ORTHO05D000867 7.8e-23 110.2 82 69.5
PGSC0003DMG400028607 Solanum tuberosum HOM05D001055 ORTHO05D000867 7.8e-23 110.2 82 69.5
CAN.G1132.11 Capsicum annuum HOM05D001055 ORTHO05D000867 1.0e-22 109.8 82 68.3
Hma1.2p1_1362F.1_g278240 Hydrangea macrophylla HOM05D001055 ORTHO05D000867 1.0e-22 109.8 82 69.5
Nitab4.5_0002031g0010 Nicotiana tabacum HOM05D001055 ORTHO05D000867 1.3e-22 109.4 82 65.9
CSS0002251 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 5.0e-22 107.5 85 68.2
CSS0018394 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 5.0e-22 107.5 85 67.1
CSS0049964 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 5.0e-22 107.5 82 68.3
Rhsim07G0181700 Rhododendron simsii HOM05D001055 ORTHO05D000867 5.0e-22 107.5 85 67.1
Cfa006559 Carpinus fangiana HOM05D001055 ORTHO05D000867 6.6e-22 107.1 82 67.1
CANSAT54G0947 Cannabis sativa HOM05D001055 ORTHO05D000867 8.6e-22 106.7 82 63.4
Peaxi162Scf00037g00126 Petunia axillaris HOM05D001055 ORTHO05D000867 1.5e-21 105.9 82 65.9
Atru.chr2.461 Acer truncatum HOM05D001055 ORTHO05D000867 1.9e-21 105.5 82 64.6
Cpa.g.sc48.27 Carica papaya HOM05D001055 ORTHO05D000867 1.9e-21 105.5 82 68.3
CiPaw.07G015700 Carya illinoinensis HOM05D001055 ORTHO05D000867 1.9e-21 105.5 82 64.6
DCAR_029429 Daucus carota HOM05D001055 ORTHO05D000867 1.9e-21 105.5 85 68.2
GSVIVG01000027001 Vitis vinifera HOM05D001055 ORTHO05D000867 1.9e-21 105.5 82 64.6
RcHm_v2.0_Chr3g0454301 Rosa chinensis HOM05D001055 ORTHO05D000867 2.5e-21 105.1 82 68.3
HanXRQChr14g0446401 Helianthus annuus HOM05D001055 ORTHO05D000867 4.3e-21 104.4 80 68.8
Oeu027744.2 Olea europaea HOM05D001055 ORTHO05D000867 4.3e-21 104.4 85 69.4
COL.COLO4_13503 Corchorus olitorius HOM05D001055 ORTHO05D000867 5.6e-21 104.0 82 67.1
Thecc.05G306200 Theobroma cacao HOM05D001055 ORTHO05D000867 5.6e-21 104.0 82 65.9
Migut.N01950 Erythranthe guttata HOM05D001055 ORTHO05D000867 7.3e-21 103.6 82 67.1
PGR083G1012 Punica granatum HOM05D001055 ORTHO05D000867 7.3e-21 103.6 82 64.6
Sc09g0003270 Simmondsia chinensis HOM05D001055 ORTHO05D000867 7.3e-21 103.6 82 64.6
CSS0031507 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 9.5e-21 103.2 85 65.9
FvH4_6g05530 Fragaria vesca HOM05D001055 ORTHO05D000867 9.5e-21 103.2 82 65.9
FAN02G2356 Fragaria x ananassa HOM05D001055 ORTHO05D000867 9.5e-21 103.2 82 65.9
FAN05G5400 Fragaria x ananassa HOM05D001055 ORTHO05D000867 9.5e-21 103.2 82 65.9
FAN05G5610 Fragaria x ananassa HOM05D001055 ORTHO05D000867 9.5e-21 103.2 82 65.9
FAN14G0326 Fragaria x ananassa HOM05D001055 ORTHO05D000867 9.5e-21 103.2 82 65.9
QL03p006143 Quercus lobata HOM05D001055 ORTHO05D000867 9.5e-21 103.2 82 64.6
CSS0024397 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 1.2e-20 102.8 85 65.9
Prupe.6G328600 Prunus persica HOM05D001055 ORTHO05D000867 1.2e-20 102.8 82 67.1
arahy.Tifrunner.gnm1.ann1.T194AB Arachis hypogaea HOM05D001055 ORTHO05D000867 1.6e-20 102.4 82 64.6
FAN14G5710 Fragaria x ananassa HOM05D001055 ORTHO05D000867 1.6e-20 102.4 82 65.9
MD04G1207600 Malus domestica HOM05D001055 ORTHO05D000867 1.6e-20 102.4 82 65.9
Psat3g010440 Pisum sativum HOM05D001055 ORTHO05D000867 1.6e-20 102.4 82 63.4
Eucgr.F04355 Eucalyptus grandis HOM05D001055 ORTHO05D000867 2.1e-20 102.1 82 65.9
SGA_v2.0_scaffold81G26085 Striga asiatica HOM05D001055 ORTHO05D000867 2.1e-20 102.1 82 67.1
arahy.Tifrunner.gnm1.ann1.HD8J2L Arachis hypogaea HOM05D001055 ORTHO05D000867 2.8e-20 101.7 82 63.4
FAN09G2588 Fragaria x ananassa HOM05D001055 ORTHO05D000867 2.8e-20 101.7 82 64.6
Glyma.03G239500 Glycine max HOM05D001055 ORTHO05D000867 2.8e-20 101.7 82 65.9
Gohir.D11G273900 Gossypium hirsutum HOM05D001055 ORTHO05D000867 2.8e-20 101.7 82 64.6
Gorai.007G295500 Gossypium raimondii HOM05D001055 ORTHO05D000867 2.8e-20 101.7 82 64.6
THA.LOC104820960 Tarenaya hassleriana HOM05D001055 ORTHO05D000867 2.8e-20 101.7 82 65.9
vmacro23129 Vaccinium macrocarpon HOM05D001055 ORTHO05D000867 2.8e-20 101.7 85 64.7
ECA238G4658 Erigeron canadensis HOM05D001055 ORTHO05D000867 3.6e-20 101.3 80 67.5
Thhalv10007271m.g Eutrema salsugineum HOM05D001055 ORTHO05D000867 3.6e-20 101.3 82 67.1
Manes.09G164900 Manihot esculenta HOM05D001055 ORTHO05D000867 3.6e-20 101.3 82 63.4
TWI56G1063 Tripterygium wilfordii HOM05D001055 ORTHO05D000867 3.6e-20 101.3 82 63.4
A09p65660 Brassica napus HOM05D001055 ORTHO05D000867 4.7e-20 100.9 82 67.1
C08p49740 Brassica napus HOM05D001055 ORTHO05D000867 4.7e-20 100.9 82 67.1
BolC8t52501H Brassica oleracea HOM05D001055 ORTHO05D000867 4.7e-20 100.9 82 67.1
BraA09t41910Z Brassica rapa HOM05D001055 ORTHO05D000867 4.7e-20 100.9 82 67.1
Duzib177G0123 Durio zibethinus HOM05D001055 ORTHO05D000867 4.7e-20 100.9 82 63.4
Lsat_1_v5_gn_2_64181 Lactuca sativa HOM05D001055 ORTHO05D000867 4.7e-20 100.9 80 67.5
Carub.0001s0827 Capsella rubella HOM05D001055 ORTHO05D000867 6.2e-20 100.5 82 65.9
Gohir.A11G263800 Gossypium hirsutum HOM05D001055 ORTHO05D000867 6.2e-20 100.5 82 64.6
Lj9A684G47 Lonicera japonica HOM05D001055 ORTHO05D000867 6.2e-20 100.5 85 64.7
Lj1g0015621 Lotus japonicus HOM05D001055 ORTHO05D000867 6.2e-20 100.5 82 64.6
Phvul.006G093300 Phaseolus vulgaris HOM05D001055 ORTHO05D000867 8.0e-20 100.1 82 64.6
TPR.G33215 Trifolium pratense HOM05D001055 ORTHO05D000867 8.0e-20 100.1 82 62.2
CARHR008860 Cardamine hirsuta HOM05D001055 ORTHO05D000867 1.1e-19 99.8 82 65.9
Lalb_Chr15g0077161 Lupinus albus HOM05D001055 ORTHO05D000867 1.1e-19 99.8 82 63.4
Potri.013G025100 Populus trichocarpa HOM05D001055 ORTHO05D000867 1.1e-19 99.8 82 64.6
AT1G08960 Arabidopsis thaliana HOM05D001055 ORTHO05D000867 1.8e-19 99.0 80 67.5
AUR62000892 Chenopodium quinoa HOM05D001055 ORTHO05D000867 1.8e-19 99.0 82 62.2
Sp1g07570 Schrenkiella parvula HOM05D001055 ORTHO05D000867 1.8e-19 99.0 82 65.9
EL10Ac4g09332 Beta vulgaris HOM05D001055 ORTHO05D000867 2.3e-19 98.6 82 63.4
AUR62005081 Chenopodium quinoa HOM05D001055 ORTHO05D000867 2.3e-19 98.6 82 62.2
Manes.08G122500 Manihot esculenta HOM05D001055 ORTHO05D000867 2.3e-19 98.6 82 63.4
MSTRG.5109 Avicennia marina HOM05D001055 ORTHO05D000867 4.0e-19 97.8 82 63.4
BcaC07g41914 Brassica carinata HOM05D001055 ORTHO05D000867 4.0e-19 97.8 82 65.9
Medtr7g113730 Medicago truncatula HOM05D001055 ORTHO05D000867 4.0e-19 97.8 82 61.0
PSO302G0049 Papaver somniferum HOM05D001055 ORTHO05D000867 5.2e-19 97.4 82 61.0
Sabra13G0026300 Salix brachista HOM05D001055 ORTHO05D000867 5.2e-19 97.4 82 61.0
AL1G19390 Arabidopsis lyrata HOM05D001055 ORTHO05D000867 6.8e-19 97.1 80 66.2
Nn4g26206 Nelumbo nucifera HOM05D001055 ORTHO05D000867 6.8e-19 97.1 82 64.6
Aa31sc17G50 Aethionema arabicum HOM05D001055 ORTHO05D000867 1.2e-18 96.3 80 63.8
Ca_09366_v3 Cicer arietinum L. HOM05D001055 ORTHO05D000867 1.2e-18 96.3 82 59.8
TAR362G0089 Trochodendron aralioides HOM05D001055 ORTHO05D000867 1.2e-18 96.3 82 64.6
ClCG03G016870 Citrullus lanatus HOM05D001055 ORTHO05D000867 1.5e-18 95.9 82 61.0
MBI17_g29945_MAGBIO Magnolia biondii HOM05D001055 ORTHO05D000867 1.5e-18 95.9 82 59.8
Sed0012937 Sechium edule HOM05D001055 ORTHO05D000867 2.0e-18 95.5 82 61.0
VMungo0540G2236 Vigna mungo HOM05D001055 ORTHO05D000867 2.6e-18 95.1 82 63.4
Ah.06g189160 Amaranthus hybridus HOM05D001055 ORTHO05D000867 9.8e-18 93.2 73 65.8
Zm00001eb406420 Zea mays HOM05D001055 ORTHO05D000867 9.8e-18 93.2 82 58.5
Ciclev10000843m.g Citrus clementina HOM05D001055 ORTHO05D000867 2.2e-17 92.0 82 59.8
Haze_04223 Corylus avellana HOM05D000665 ORTHO05D000140 2.2e-17 92.0 66 69.7
MD12G1221900 Malus domestica HOM05D001055 ORTHO05D000867 8.3e-17 90.1 81 64.2
Aqoxy2G03280 Aquilegia oxysepala HOM05D001055 ORTHO05D000867 3.2e-16 88.2 82 59.8
CSS0035143 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 6.0e-15 84.0 76 60.5
CSS0020087 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 6.6e-14 80.5 78 57.7
HPP92_025574 Vanilla planifolia HOM05D001055 ORTHO05D000867 1.4e-11 72.8 80 50.0
CBR_g45377 Chara braunii HOM05D001055 ORTHO05D000867 4.9e-09 64.3 79 45.6
QL03p005172 Quercus lobata HOM05D001055 ORTHO05D000867 4.1e-08 61.2 53 58.5
MELO3C015334.2 Cucumis melo HOM05D001055 ORTHO05D000867 2.7e-07 58.5 49 61.2
SMO119G0232 Selaginella moellendorffii HOM05D001055 ORTHO05D000867 2.7e-07 58.5 77 45.5


User provided reference genes

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