Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 2.5e-130 468.8 232 100.0
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.6e-89 333.2 180 85.6
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.1e-89 332.8 180 87.8
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.6e-89 332.0 180 85.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 6.1e-89 331.3 180 86.7
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 8.0e-89 330.9 180 85.0
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.8e-88 329.7 180 86.1
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.8e-88 329.7 180 86.1
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.8e-88 329.7 180 86.7
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 2.3e-88 329.3 180 84.4
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 3.0e-88 328.9 180 83.3
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.4e-87 325.5 180 84.4
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 5.7e-87 324.7 180 82.2
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.3e-86 323.6 180 82.2
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.2e-86 322.8 180 82.2
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.9e-86 322.4 180 80.6
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 2.9e-86 322.4 179 82.7
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 3.7e-86 322.0 180 83.3
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 8.3e-86 320.9 180 82.2
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 8.3e-86 320.9 180 80.6
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 8.3e-86 320.9 180 80.0
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.4e-85 320.1 180 82.2
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.4e-85 320.1 180 80.6
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 1.4e-85 320.1 180 81.7
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.8e-85 319.7 180 81.1
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.8e-85 319.7 180 82.2
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.2e-85 318.9 180 82.8
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.2e-85 318.9 180 82.8
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 3.2e-85 318.9 180 81.7
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 4.1e-85 318.5 180 82.2
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 4.1e-85 318.5 180 81.7
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 5.4e-85 318.2 180 83.3
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 5.4e-85 318.2 180 80.6
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 9.2e-85 317.4 180 80.6
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 9.2e-85 317.4 180 81.1
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 9.2e-85 317.4 180 81.1
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.2e-84 317.0 180 82.2
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.2e-84 317.0 180 82.2
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.2e-84 317.0 180 80.0
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.6e-84 316.6 180 81.1
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 1.6e-84 316.6 180 81.1
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.6e-84 316.6 178 82.0
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.0e-84 316.2 180 80.6
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.0e-84 316.2 180 80.6
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 2.0e-84 316.2 180 81.1
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.0e-84 316.2 180 81.1
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 3.5e-84 315.5 180 79.4
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 3.5e-84 315.5 180 80.6
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.5e-84 315.5 180 81.7
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 3.5e-84 315.5 180 78.3
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 4.6e-84 315.1 180 81.7
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 4.6e-84 315.1 180 79.4
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 4.6e-84 315.1 180 80.6
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.0e-83 313.9 180 78.9
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.0e-83 313.9 180 78.9
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.7e-83 313.2 180 79.4
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.3e-83 312.8 180 78.9
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.3e-83 312.8 180 81.1
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.3e-83 312.8 180 78.9
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 3.0e-83 312.4 180 77.8
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 2.5e-82 309.3 178 80.9
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 3.3e-82 308.9 199 73.9
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 4.3e-82 308.5 180 79.4
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 7.3e-82 307.8 178 79.2
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 9.5e-82 307.4 179 81.0
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 8.0e-81 304.3 187 77.5
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 1.1e-80 303.9 180 79.4
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 5.2e-80 301.6 181 77.3
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.0e-79 299.7 206 72.3
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 3.4e-79 298.9 180 75.0
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 3.4e-79 298.9 178 78.1
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 5.8e-79 298.1 181 75.7
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 1.3e-78 297.0 203 69.5
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.7e-78 296.6 165 83.6
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 8.3e-78 294.3 159 88.1
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 2.0e-76 289.7 160 85.0
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.7e-75 286.6 177 74.6
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 3.0e-75 285.8 180 75.6
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 5.0e-75 285.0 159 84.3
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.2e-73 280.4 182 72.5
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 4.7e-73 278.5 174 73.6
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 1.4e-72 276.9 160 80.0
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.4e-72 276.9 180 75.6
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 6.8e-72 274.6 161 77.0
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.2e-71 273.9 198 68.2
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.5e-71 273.5 167 76.0
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.0e-71 273.1 178 71.3
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 4.4e-71 271.9 160 76.2
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 5.8e-71 271.6 175 68.0
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.3e-70 270.4 187 69.5
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 1.7e-70 270.0 162 77.8
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 9.2e-69 264.2 164 75.6
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 7.8e-68 261.2 153 79.7
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.1e-66 257.3 175 65.7
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 2.8e-65 252.7 175 64.0
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 6.2e-65 251.5 142 80.3
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 8.9e-64 247.7 218 58.7
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 8.9e-64 247.7 139 79.9
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.9e-61 240.0 181 70.2
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.9e-58 229.9 171 60.2
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 2.7e-52 209.5 174 52.9
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 7.8e-52 208.0 114 78.9
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.9e-50 203.4 147 65.3
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 8.1e-49 198.0 147 65.3
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.1e-44 183.3 257 45.1
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.1e-44 183.3 257 45.1
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 7.9e-44 181.4 146 57.5
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 6.4e-38 161.8 113 73.5
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.9e-37 160.2 93 77.4
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 7.1e-37 158.3 96 74.0
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 1.6e-36 157.1 174 41.4
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.1e-36 156.8 176 44.9
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 5.1e-35 152.1 90 75.6
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 1.6e-33 147.1 116 61.2
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 8.4e-30 134.8 177 43.5
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.1e-26 124.4 80 70.0
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 2.6e-23 113.2 99 58.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 5.9e-23 112.1 71 63.4
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.5e-21 106.7 65 78.5
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 7.9e-20 101.7 100 57.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 5.7e-18 95.5 56 83.9
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 3.7e-17 92.8 56 76.8
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 2.4e-16 90.1 50 82.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.9e-14 83.2 46 78.3
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.9e-06 56.6 57 52.6
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.0e-06 55.8 38 65.8


User provided reference genes

Program Settings