Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03620 Coffea canephora HOM05D000061 ORTHO05D154491 8.4e-94 347.1 180 100.0
Lj3A1028T34 Lonicera japonica HOM05D000061 ORTHO05D000050 1.5e-10 70.5 43 76.7
Cc11_g11640 Coffea canephora HOM05D000061 ORTHO05D000050 3.4e-10 69.3 43 79.1
Nitab4.5_0013455g0020 Nicotiana tabacum HOM05D000061 ORTHO05D000050 7.5e-10 68.2 43 76.7
vmacro10482 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 9.8e-10 67.8 43 72.1
vmacro22756 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 9.8e-10 67.8 43 72.1
CSS0004096 Camellia sinensis var. sinensis HOM05D000061 ORTHO05D000050 1.7e-09 67.0 56 60.7
HanXRQChr16g0527061 Helianthus annuus HOM05D000061 ORTHO05D000050 1.7e-09 67.0 43 72.1
CSS0043926 Camellia sinensis var. sinensis HOM05D000061 ORTHO05D000050 2.2e-09 66.6 43 72.1
Migut.E00248 Erythranthe guttata HOM05D000061 ORTHO05D000050 2.2e-09 66.6 42 76.2
Nitab4.5_0000027g0190 Nicotiana tabacum HOM05D000061 ORTHO05D000050 2.2e-09 66.6 43 74.4
Dinv15594 Davidia involucrata HOM05D000061 ORTHO05D000050 2.9e-09 66.2 61 52.5
Dinv15597 Davidia involucrata HOM05D000061 ORTHO05D000050 2.9e-09 66.2 61 52.5
Oeu057413.1 Olea europaea HOM05D000061 ORTHO05D000050 2.9e-09 66.2 42 73.8
Oeu057414.1 Olea europaea HOM05D000061 ORTHO05D000050 2.9e-09 66.2 42 73.8
MSTRG.2291 Avicennia marina HOM05D000061 ORTHO05D000050 3.7e-09 65.9 42 73.8
Lj3A507T9 Lonicera japonica HOM05D000061 ORTHO05D016470 3.7e-09 65.9 43 67.4
Dinv34025 Davidia involucrata HOM05D000061 ORTHO05D000050 4.9e-09 65.5 45 66.7
Lsat_1_v5_gn_4_25040 Lactuca sativa HOM05D000061 ORTHO05D000050 4.9e-09 65.5 42 71.4
Lj3C504G0 Lonicera japonica HOM05D000061 ORTHO05D000050 4.9e-09 65.5 43 67.4
Solyc05g011970.3 Solanum lycopersicum HOM05D000061 ORTHO05D000050 4.9e-09 65.5 42 76.2
Sopen05g006710 Solanum pennellii HOM05D000061 ORTHO05D000050 4.9e-09 65.5 42 76.2
Hma1.2p1_0428F.1_g150950 Hydrangea macrophylla HOM05D000061 ORTHO05D000050 8.3e-09 64.7 43 67.4
Peaxi162Scf01276g00002 Petunia axillaris HOM05D000061 ORTHO05D000050 8.3e-09 64.7 43 72.1
TAR721G0002 Trochodendron aralioides HOM05D000061 ORTHO05D000050 8.3e-09 64.7 43 67.4
CAN.G1021.9 Capsicum annuum HOM05D000061 ORTHO05D000050 1.9e-08 63.5 43 69.8
DCAR_026686 Daucus carota HOM05D000061 ORTHO05D000050 1.9e-08 63.5 43 65.1
TAR622G0194 Trochodendron aralioides HOM05D000061 ORTHO05D000050 3.2e-08 62.8 43 65.1
Gohir.D13G085000 Gossypium hirsutum HOM05D000061 ORTHO05D000050 4.1e-08 62.4 75 44.0
Gorai.013G097000 Gossypium raimondii HOM05D000061 ORTHO05D000050 4.1e-08 62.4 75 44.0
COL.COLO4_27829 Corchorus olitorius HOM05D000061 ORTHO05D000050 5.4e-08 62.0 109 34.9
Prupe.1G292700 Prunus persica HOM05D000061 ORTHO05D000050 5.4e-08 62.0 43 67.4
Rhsim12G0071600 Rhododendron simsii HOM05D000061 ORTHO05D000050 5.4e-08 62.0 51 54.9
Potri.019G014407 Populus trichocarpa HOM05D000061 ORTHO05D000050 7.0e-08 61.6 46 58.7
CiPaw.06G094400 Carya illinoinensis HOM05D000061 ORTHO05D000050 9.2e-08 61.2 45 60.0
PSO017G4498 Papaver somniferum HOM05D000061 ORTHO05D000050 9.2e-08 61.2 43 67.4
Rhsim09G0122900 Rhododendron simsii HOM05D000061 ORTHO05D000050 9.2e-08 61.2 43 65.1
Sabra19G0027500 Salix brachista HOM05D000061 ORTHO05D000050 9.2e-08 61.2 46 58.7
CSS0048406 Camellia sinensis var. sinensis HOM05D000061 ORTHO05D000050 1.2e-07 60.8 47 59.6
Dinv15586 Davidia involucrata HOM05D000061 ORTHO05D000050 1.2e-07 60.8 43 65.1
Dinv20126 Davidia involucrata HOM05D000061 ORTHO05D000050 1.2e-07 60.8 43 65.1
Dinv34026 Davidia involucrata HOM05D000061 ORTHO05D000050 1.2e-07 60.8 43 65.1
ECA234G4371 Erigeron canadensis HOM05D000061 ORTHO05D000050 1.2e-07 60.8 43 65.1
PSO478G0784 Papaver somniferum HOM05D000061 ORTHO05D000050 1.2e-07 60.8 53 58.5
COL.COLO4_27824 Corchorus olitorius HOM05D000061 ORTHO05D000050 1.6e-07 60.5 61 52.5
COL.COLO4_27819 Corchorus olitorius HOM05D000061 ORTHO05D000050 2.0e-07 60.1 119 37.8
Dinv15589 Davidia involucrata HOM05D000061 ORTHO05D000050 2.0e-07 60.1 61 50.8
Rhsim09G0123100 Rhododendron simsii HOM05D000061 ORTHO05D000050 2.0e-07 60.1 43 62.8
RcHm_v2.0_Chr5g0025731 Rosa chinensis HOM05D000061 ORTHO05D000050 2.0e-07 60.1 58 50.0
Sabra19G0029900 Salix brachista HOM05D000061 ORTHO05D000050 2.0e-07 60.1 46 56.5
vmacro01301 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 2.7e-07 59.7 43 60.5
vmacro11049 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 2.7e-07 59.7 51 52.9
PSO017G0853 Papaver somniferum HOM05D000061 ORTHO05D000050 3.5e-07 59.3 53 56.6
Rhsim12G0072200 Rhododendron simsii HOM05D000061 ORTHO05D000050 3.5e-07 59.3 43 60.5
CSS0027743 Camellia sinensis var. sinensis HOM05D000061 ORTHO05D000050 4.6e-07 58.9 43 60.5
CiPaw.06G094200 Carya illinoinensis HOM05D000061 ORTHO05D000050 4.6e-07 58.9 43 62.8
COL.COLO4_27820 Corchorus olitorius HOM05D000061 ORTHO05D000050 4.6e-07 58.9 45 64.4
Duzib248G1040 Durio zibethinus HOM05D000061 ORTHO05D000050 4.6e-07 58.9 45 55.6
FAN12G4159 Fragaria x ananassa HOM05D000061 ORTHO05D000050 4.6e-07 58.9 49 55.1
Gohir.A04G145400 Gossypium hirsutum HOM05D000061 ORTHO05D000050 4.6e-07 58.9 45 62.2
Gohir.D04G190000 Gossypium hirsutum HOM05D000061 ORTHO05D000050 4.6e-07 58.9 45 62.2
Gorai.012G185300 Gossypium raimondii HOM05D000061 ORTHO05D000050 4.6e-07 58.9 45 62.2
Manes.01G025200 Manihot esculenta HOM05D000061 ORTHO05D000050 4.6e-07 58.9 54 53.7
vmacro01303 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 4.6e-07 58.9 43 60.5
Actinidia19905 Actinidia chinensis HOM05D000061 ORTHO05D000050 6.0e-07 58.5 43 60.5
Ciclev10033709m.g Citrus clementina HOM05D000061 ORTHO05D000050 6.0e-07 58.5 45 57.8
COL.COLO4_27828 Corchorus olitorius HOM05D000061 ORTHO05D000050 6.0e-07 58.5 45 60.0
Hma1.2p1_0428F.1_g150900 Hydrangea macrophylla HOM05D000061 ORTHO05D000050 6.0e-07 58.5 42 64.3
RcHm_v2.0_Chr5g0025681 Rosa chinensis HOM05D000061 ORTHO05D000050 6.0e-07 58.5 58 50.0
RcHm_v2.0_Chr6g0272651 Rosa chinensis HOM05D000061 ORTHO05D000050 6.0e-07 58.5 55 52.7
Ciclev10033321m.g Citrus clementina HOM05D000061 ORTHO05D000050 7.8e-07 58.2 61 49.2
Cc11_g11620 Coffea canephora HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 62.8
Lsat_1_v5_gn_5_131480 Lactuca sativa HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 55.8
Oeu024163.1 Olea europaea HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 60.5
QL03p068276 Quercus lobata HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 62.8
Rhsim09G0123000 Rhododendron simsii HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 62.8
Rhsim12G0071800 Rhododendron simsii HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 58.1
Thecc.02G323900 Theobroma cacao HOM05D000061 ORTHO05D000050 7.8e-07 58.2 44 59.1
TWI18G0842 Tripterygium wilfordii HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 58.1
vmacro10480 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 7.8e-07 58.2 43 62.8
MSTRG.13464 Avicennia marina HOM05D000061 ORTHO05D000050 1.0e-06 57.8 72 45.8
COL.COLO4_27823 Corchorus olitorius HOM05D000061 ORTHO05D000050 1.0e-06 57.8 45 60.0
Duzib248G0250 Durio zibethinus HOM05D000061 ORTHO05D000050 1.0e-06 57.8 45 60.0
Duzib248G1001 Durio zibethinus HOM05D000061 ORTHO05D000050 1.0e-06 57.8 45 60.0
Duzib248G1398 Durio zibethinus HOM05D000061 ORTHO05D000050 1.0e-06 57.8 45 57.8
Lj3A1027T90 Lonicera japonica HOM05D000061 ORTHO05D000050 1.0e-06 57.8 44 65.9
Lj3A1028T35 Lonicera japonica HOM05D000061 ORTHO05D000050 1.0e-06 57.8 43 62.8
Thecc.02G324500 Theobroma cacao HOM05D000061 ORTHO05D000050 1.0e-06 57.8 58 51.7
Thecc.04G203900 Theobroma cacao HOM05D000061 ORTHO05D000050 1.0e-06 57.8 43 62.8
Actinidia31930 Actinidia chinensis HOM05D000061 ORTHO05D000050 1.3e-06 57.4 73 43.8
COL.COLO4_27822 Corchorus olitorius HOM05D000061 ORTHO05D000050 1.3e-06 57.4 49 57.1
Duzib248G0271 Durio zibethinus HOM05D000061 ORTHO05D000050 1.3e-06 57.4 45 60.0
SGA_v2.0_scaffold59G20659 Striga asiatica HOM05D000061 ORTHO05D000050 1.3e-06 57.4 56 50.0
Thecc.02G324600 Theobroma cacao HOM05D000061 ORTHO05D000050 1.3e-06 57.4 45 57.8
COL.COLO4_27825 Corchorus olitorius HOM05D000061 ORTHO05D000050 1.7e-06 57.0 44 59.1
COL.COLO4_27830 Corchorus olitorius HOM05D000061 ORTHO05D000050 1.7e-06 57.0 43 55.8
Dinv20129 Davidia involucrata HOM05D000041 ORTHO05D000061 1.7e-06 57.0 61 49.2
Manes.01G025100 Manihot esculenta HOM05D000061 ORTHO05D000050 1.7e-06 57.0 43 55.8
Oeu057416.1 Olea europaea HOM05D000061 ORTHO05D000050 1.7e-06 57.0 43 60.5
TWI18G0235 Tripterygium wilfordii HOM05D000061 ORTHO05D000050 1.7e-06 57.0 43 58.1
TWI18G0668 Tripterygium wilfordii HOM05D000061 ORTHO05D000050 1.7e-06 57.0 43 58.1
vmacro01300 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 1.7e-06 57.0 43 62.8
vmacro10481 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 1.7e-06 57.0 42 57.1
vmacro22757 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 1.7e-06 57.0 42 57.1
Atru.chr11.1579 Acer truncatum HOM05D000061 ORTHO05D000050 2.3e-06 56.6 43 58.1
Duzib248G0758 Durio zibethinus HOM05D000061 ORTHO05D000050 2.3e-06 56.6 71 43.7
MD16G1058100 Malus domestica HOM05D000061 ORTHO05D000050 2.3e-06 56.6 58 50.0
Actinidia31929 Actinidia chinensis HOM05D000061 ORTHO05D000050 3.0e-06 56.2 43 53.5
Duzib248G0564 Durio zibethinus HOM05D000061 ORTHO05D000050 3.0e-06 56.2 61 45.9
Sabra10G0107600 Salix brachista HOM05D000061 ORTHO05D000050 3.0e-06 56.2 59 49.2
CANSAT80G1883 Cannabis sativa HOM05D000061 ORTHO05D000050 3.9e-06 55.8 43 58.1
FAN11G3043 Fragaria x ananassa HOM05D000061 ORTHO05D000050 3.9e-06 55.8 58 48.3
Manes.05G111200 Manihot esculenta HOM05D000061 ORTHO05D000050 3.9e-06 55.8 43 58.1
Oeu057418.1 Olea europaea HOM05D000061 ORTHO05D000050 3.9e-06 55.8 43 58.1
Prupe.1G292500 Prunus persica HOM05D000061 ORTHO05D000050 3.9e-06 55.8 43 55.8
Thecc.02G323800 Theobroma cacao HOM05D000061 ORTHO05D000050 3.9e-06 55.8 44 54.5
vmacro10483 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 3.9e-06 55.8 43 60.5
vmacro22755 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 3.9e-06 55.8 43 60.5
Ciclev10033485m.g Citrus clementina HOM05D000061 ORTHO05D000050 5.0e-06 55.5 50 50.0
COL.COLO4_27821 Corchorus olitorius HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 60.5
DCAR_005429 Daucus carota HOM05D000061 ORTHO05D000050 5.0e-06 55.5 42 61.9
Gohir.A02G022000 Gossypium hirsutum HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 62.8
Gohir.A04G145500 Gossypium hirsutum HOM05D000061 ORTHO05D000050 5.0e-06 55.5 45 60.0
Gohir.D10G141701 Gossypium hirsutum HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 58.1
Gorai.011G158000 Gossypium raimondii HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 58.1
Hma1.2p1_0428F.1_g150905 Hydrangea macrophylla HOM05D000061 ORTHO05D000050 5.0e-06 55.5 42 61.9
Hma1.2p1_0473F.1_g160150 Hydrangea macrophylla HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 55.8
Peaxi162Scf00597g00110 Petunia axillaris HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 53.5
Potri.010G139300 Populus trichocarpa HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 58.1
Potri.010G139500 Populus trichocarpa HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 53.5
Prupe.1G292100 Prunus persica HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 58.1
Prupe.1G292800 Prunus persica HOM05D000061 ORTHO05D000050 5.0e-06 55.5 90 37.8
QL03p068230 Quercus lobata HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 60.5
QL03p068266 Quercus lobata HOM05D000061 ORTHO05D000050 5.0e-06 55.5 43 60.5
Sabra19G0029600 Salix brachista HOM05D000061 ORTHO05D000050 5.0e-06 55.5 49 55.1
Duzib251G0300 Durio zibethinus HOM05D000061 ORTHO05D000050 6.6e-06 55.1 45 53.3
FAN22G0346 Fragaria x ananassa HOM05D000061 ORTHO05D000050 6.6e-06 55.1 59 50.8
Gohir.A02G022500 Gossypium hirsutum HOM05D000061 ORTHO05D000050 6.6e-06 55.1 68 44.1
Gorai.005G033600 Gossypium raimondii HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 60.5
MD16G1056400 Malus domestica HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 58.1
Peaxi162Scf00807g00710 Petunia axillaris HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 53.5
Peaxi162Scf01546g00001 Petunia axillaris HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 53.5
Prupe.1G291200 Prunus persica HOM05D000061 ORTHO05D000050 6.6e-06 55.1 44 59.1
Rhsim12G0072300 Rhododendron simsii HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 55.8
RcHm_v2.0_Chr4g0437501 Rosa chinensis HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 55.8
RcHm_v2.0_Chr4g0437521 Rosa chinensis HOM05D000061 ORTHO05D000050 6.6e-06 55.1 46 56.5
RcHm_v2.0_Chr5g0025711 Rosa chinensis HOM05D000061 ORTHO05D000050 6.6e-06 55.1 59 45.8
Thecc.04G203800 Theobroma cacao HOM05D000061 ORTHO05D000050 6.6e-06 55.1 45 55.6
TWI09G0693 Tripterygium wilfordii HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 55.8
vmacro01302 Vaccinium macrocarpon HOM05D000061 ORTHO05D000050 6.6e-06 55.1 43 53.5
Dinv00753 Davidia involucrata HOM05D000061 ORTHO05D000050 8.6e-06 54.7 43 58.1
Dinv20138 Davidia involucrata HOM05D000061 ORTHO05D000050 8.6e-06 54.7 43 58.1
Migut.E00251 Erythranthe guttata HOM05D000061 ORTHO05D000050 8.6e-06 54.7 47 51.1
FAN17G1513 Fragaria x ananassa HOM05D000061 ORTHO05D000050 8.6e-06 54.7 45 55.6
FAN17G1907 Fragaria x ananassa HOM05D000061 ORTHO05D000050 8.6e-06 54.7 45 55.6
Gohir.D02G029900 Gossypium hirsutum HOM05D000061 ORTHO05D000050 8.6e-06 54.7 43 60.5
Peaxi162Scf00005g00359 Petunia axillaris HOM05D000061 ORTHO05D000050 8.6e-06 54.7 43 51.2
Potri.010G139200 Populus trichocarpa HOM05D000061 ORTHO05D000050 8.6e-06 54.7 43 55.8
Potri.010G139400 Populus trichocarpa HOM05D000061 ORTHO05D000050 8.6e-06 54.7 43 55.8
Prupe.1G292000 Prunus persica HOM05D000061 ORTHO05D000050 8.6e-06 54.7 43 58.1


User provided reference genes

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