Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 2.2e-154 548.9 277 100.0
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 5.5e-52 208.8 315 44.4
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 1.1e-49 201.1 279 45.9
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 4.3e-49 199.1 332 41.0
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 5.7e-49 198.7 320 43.8
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 1.3e-48 197.6 320 43.8
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 2.2e-48 196.8 304 43.8
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 3.1e-47 193.0 306 42.8
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 9.1e-47 191.4 306 42.8
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 3.4e-46 189.5 291 45.0
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 3.4e-46 189.5 289 44.6
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 1.3e-45 187.6 331 41.7
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 4.4e-41 172.6 312 40.4
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 4.4e-41 172.6 308 40.6
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 1.7e-40 170.6 326 40.2
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 1.7e-40 170.6 316 39.9
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 2.2e-40 170.2 338 38.5
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 3.7e-40 169.5 308 41.6
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 4.8e-40 169.1 320 40.6
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 8.2e-40 168.3 323 40.2
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 1.1e-39 167.9 312 38.1
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 1.8e-39 167.2 323 38.1
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 2.4e-39 166.8 305 40.0
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 9.1e-39 164.9 307 38.1
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 1.2e-38 164.5 320 38.4
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 4.5e-38 162.5 300 41.7
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 5.0e-37 159.1 317 38.8
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 6.5e-37 158.7 308 38.6
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 8.5e-37 158.3 309 39.2
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 1.5e-36 157.5 338 34.6
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 2.5e-36 156.8 309 38.8
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 3.2e-36 156.4 323 38.4
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 2.7e-35 153.3 319 37.9
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.6e-35 152.9 320 36.2
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 3.6e-35 152.9 310 36.8
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 6.1e-35 152.1 305 37.7
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 1.0e-34 151.4 327 35.5
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 1.4e-34 151.0 315 36.2
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.8e-34 150.6 320 35.9
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 2.3e-34 150.2 315 36.5
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 2.3e-34 150.2 319 37.3
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 2.3e-34 150.2 314 37.9
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 4.0e-34 149.4 314 37.3
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 1.5e-33 147.5 312 38.8
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 3.3e-33 146.4 309 37.9
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 3.3e-33 146.4 314 36.6
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 4.4e-33 146.0 313 35.1
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 5.7e-33 145.6 316 36.4
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 2.2e-32 143.7 337 35.9
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 2.8e-32 143.3 320 35.3
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 3.7e-32 142.9 259 40.2
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 4.8e-32 142.5 315 37.8
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 1.1e-31 141.4 328 37.2
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 1.4e-31 141.0 324 34.3
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 1.4e-31 141.0 324 34.3
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 1.8e-31 140.6 264 39.0
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 1.8e-31 140.6 313 33.9
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 5.9e-30 135.6 268 36.2
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.3e-29 134.4 319 34.2
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.3e-29 134.4 319 33.2
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 1.7e-29 134.0 310 36.1
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 2.2e-29 133.7 259 38.2
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 2.9e-29 133.3 287 34.1
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 2.9e-29 133.3 300 37.7
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 3.8e-29 132.9 273 38.1
CAN.G1987.3 Capsicum annuum HOM05D007538 ORTHO05D009464 5.5e-28 129.0 264 37.9
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 2.7e-27 126.7 343 35.3
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 4.7e-27 125.9 299 37.5
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 3.0e-26 123.2 282 36.5
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 8.8e-26 121.7 275 35.3
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 2.6e-25 120.2 301 34.2
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 2.2e-24 117.1 311 32.8
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 2.8e-24 116.7 331 35.0
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 3.5e-22 109.8 252 34.9
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 1.3e-21 107.8 326 33.1
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 2.9e-21 106.7 252 37.7
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 7.2e-20 102.1 229 33.2
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.6e-19 99.8 306 29.7
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 4.7e-19 99.4 283 33.9
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 8.0e-19 98.6 269 33.8
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 8.0e-19 98.6 344 29.1
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 1.8e-18 97.4 232 32.8
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 1.2e-17 94.7 281 33.8
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 1.2e-17 94.7 287 34.5
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 1.5e-17 94.4 325 28.6
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 7.5e-17 92.0 292 33.6
Psat0s1646g0240 Pisum sativum HOM05D007538 ORTHO05D009464 4.1e-15 86.3 153 39.2
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 5.4e-15 85.9 293 30.0
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 3.6e-11 73.2 192 34.4
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 8.0e-11 72.0 312 28.5
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 5.7e-09 65.9 270 27.0
MBI04_g44375_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 2.9e-08 63.5 156 36.5
MBI04_g32200_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 3.2e-07 60.1 76 48.7
THA.LOC104798612 Tarenaya hassleriana HOM05D007538 ORTHO05D009464 5.9e-06 55.8 171 32.2


User provided reference genes

Program Settings