Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03420 Coffea canephora HOM05D006211 ORTHO05D007202 5.6e-60 234.6 165 100.0
Peaxi162Scf00170g00822 Petunia axillaris HOM05D006211 ORTHO05D007202 1.1e-23 114.0 166 40.4
Dinv28989 Davidia involucrata HOM05D006211 ORTHO05D007202 5.4e-23 111.7 165 44.8
Rhsim11G0019700 Rhododendron simsii HOM05D006211 ORTHO05D007202 1.2e-22 110.5 166 41.6
Hma1.2p1_1594F.1_g292720 Hydrangea macrophylla HOM05D006211 ORTHO05D007202 2.7e-22 109.4 165 41.8
Dinv25246 Davidia involucrata HOM05D006211 ORTHO05D007202 1.5e-20 103.6 94 58.5
QL12p001245 Quercus lobata HOM05D006211 ORTHO05D007202 2.5e-20 102.8 164 39.0
vmacro00294 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 3.3e-20 102.4 166 42.8
vmacro00301 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 2.1e-19 99.8 166 42.2
COL.COLO4_16960 Corchorus olitorius HOM05D006211 ORTHO05D007202 4.8e-19 98.6 165 47.3
Lj8A306T66 Lonicera japonica HOM05D006211 ORTHO05D007202 4.8e-19 98.6 165 37.6
PGSC0003DMG400014798 Solanum tuberosum HOM05D006211 ORTHO05D007202 6.2e-19 98.2 169 37.3
PGR042G2947 Punica granatum HOM05D006211 ORTHO05D007202 8.1e-19 97.8 166 38.0
Duzib084G0219 Durio zibethinus HOM05D006211 ORTHO05D007202 2.4e-18 96.3 165 42.4
Gohir.A08G154500 Gossypium hirsutum HOM05D006211 ORTHO05D007202 2.4e-18 96.3 94 55.3
Actinidia03352 Actinidia chinensis HOM05D006211 ORTHO05D007202 3.1e-18 95.9 162 37.7
Haze_08174 Corylus avellana HOM05D006211 ORTHO05D007202 4.0e-18 95.5 165 36.4
Solyc08g076520.3 Solanum lycopersicum HOM05D006211 ORTHO05D007202 9.0e-18 94.4 170 37.6
Thecc.03G308400 Theobroma cacao HOM05D006211 ORTHO05D007202 1.2e-17 94.0 165 43.6
Gorai.004G183000 Gossypium raimondii HOM05D006211 ORTHO05D007202 1.5e-17 93.6 94 54.3
Sopen08g025100 Solanum pennellii HOM05D006211 ORTHO05D007202 1.5e-17 93.6 170 37.6
TWI60G1252 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 2.0e-17 93.2 165 38.8
Manes.17G010400 Manihot esculenta HOM05D006211 ORTHO05D007202 2.6e-17 92.8 172 46.5
Nitab4.5_0000127g0020 Nicotiana tabacum HOM05D006211 ORTHO05D007202 3.4e-17 92.4 167 37.7
Gohir.D03G175400 Gossypium hirsutum HOM05D006211 ORTHO05D007202 4.5e-17 92.0 165 52.1
Gorai.003G184400 Gossypium raimondii HOM05D006211 ORTHO05D007202 4.5e-17 92.0 165 52.1
Cfa012495 Carpinus fangiana HOM05D006211 ORTHO05D007202 7.6e-17 91.3 165 37.0
Lsat_1_v5_gn_6_3501 Lactuca sativa HOM05D006211 ORTHO05D007202 7.6e-17 91.3 168 38.7
Gohir.D08G175100 Gossypium hirsutum HOM05D006211 ORTHO05D007202 1.3e-16 90.5 92 53.3
Nitab4.5_0000529g0100 Nicotiana tabacum HOM05D006211 ORTHO05D007202 1.3e-16 90.5 169 46.2
EL10Ac5g12029 Beta vulgaris HOM05D006211 ORTHO05D007202 2.2e-16 89.7 96 52.1
CiPaw.12G067200 Carya illinoinensis HOM05D006211 ORTHO05D007202 2.9e-16 89.4 171 42.1
Duzib205G0699 Durio zibethinus HOM05D006211 ORTHO05D007202 2.9e-16 89.4 168 36.3
Oeu019228.1 Olea europaea HOM05D006211 ORTHO05D007202 3.8e-16 89.0 165 38.2
Oeu028870.1 Olea europaea HOM05D006211 ORTHO05D007202 3.8e-16 89.0 165 38.2
TWI81G0656 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 8.4e-16 87.8 165 35.8
Sabra03G0064400 Salix brachista HOM05D006211 ORTHO05D007202 1.1e-15 87.4 171 34.5
Ciclev10002672m.g Citrus clementina HOM05D006211 ORTHO05D007202 1.4e-15 87.0 94 46.8
Atru.chr6.1617 Acer truncatum HOM05D006211 ORTHO05D007202 1.9e-15 86.7 167 34.1
CiPaw.11G097200 Carya illinoinensis HOM05D006211 ORTHO05D007202 3.2e-15 85.9 165 45.5
CANSAT21G1179 Cannabis sativa HOM05D006211 ORTHO05D007202 1.2e-14 84.0 167 36.5
DCAR_008238 Daucus carota HOM05D006211 ORTHO05D007202 2.1e-14 83.2 168 34.5
Potri.003G095500 Populus trichocarpa HOM05D006211 ORTHO05D007202 2.1e-14 83.2 171 32.7
Nn1g00185 Nelumbo nucifera HOM05D006211 ORTHO05D007202 6.0e-14 81.6 93 46.2
Hund14362 Selenicereus undatus HOM05D006211 ORTHO05D007202 1.0e-13 80.9 95 47.4
Actinidia06373 Actinidia chinensis HOM05D006211 ORTHO05D007202 2.3e-13 79.7 129 37.2
Ah.12g055390 Amaranthus hybridus HOM05D006211 ORTHO05D007202 2.3e-13 79.7 94 45.7
AUR62018657 Chenopodium quinoa HOM05D006211 ORTHO05D007202 2.3e-13 79.7 95 49.5
Cpa.g.sc90.12 Carica papaya HOM05D006211 ORTHO05D007202 3.9e-13 79.0 168 32.1
TAR375G0881 Trochodendron aralioides HOM05D006211 ORTHO05D007202 3.9e-13 79.0 148 33.1
arahy.Tifrunner.gnm1.ann1.Q6MSMD Arachis hypogaea HOM05D006211 ORTHO05D007202 8.7e-13 77.8 169 36.1
arahy.Tifrunner.gnm1.ann1.USP5IX Arachis hypogaea HOM05D006211 ORTHO05D007202 8.7e-13 77.8 169 36.1
ECA233G1983 Erigeron canadensis HOM05D006211 ORTHO05D007202 8.7e-13 77.8 173 36.4
RcHm_v2.0_Chr7g0211581 Rosa chinensis HOM05D006211 ORTHO05D007202 1.1e-12 77.4 98 46.9
DCAR_004283 Daucus carota HOM05D006211 ORTHO05D007202 1.9e-12 76.6 88 44.3
MD06G1025300 Malus domestica HOM05D006211 ORTHO05D007202 1.9e-12 76.6 103 44.7
MSTRG.1998 Avicennia marina HOM05D006211 ORTHO05D007202 4.3e-12 75.5 73 52.1
Sc22g0001800 Simmondsia chinensis HOM05D006211 ORTHO05D007202 5.6e-12 75.1 98 43.9
MD16G1281100 Malus domestica HOM05D006211 ORTHO05D007202 9.6e-12 74.3 99 44.4
Prupe.5G029800 Prunus persica HOM05D006211 ORTHO05D007202 1.3e-11 73.9 105 45.7
Lalb_Chr09g0325551 Lupinus albus HOM05D006211 ORTHO05D007202 3.7e-11 72.4 167 33.5
MELO3C003431.2 Cucumis melo HOM05D006211 ORTHO05D007202 4.8e-11 72.0 165 54.5
Lalb_Chr05g0215821 Lupinus albus HOM05D006211 ORTHO05D007202 4.8e-11 72.0 170 32.9
Gohir.A03G000042 Gossypium hirsutum HOM05D006211 ORTHO05D007202 6.2e-11 71.6 165 47.3
HanXRQChr13g0394911 Helianthus annuus HOM05D006211 ORTHO05D007202 8.1e-11 71.2 167 34.7
ClCG09G011720 Citrullus lanatus HOM05D006211 ORTHO05D007202 1.4e-10 70.5 167 33.5
Medtr5g029620 Medicago truncatula HOM05D006211 ORTHO05D007202 1.8e-10 70.1 167 29.3
Sed0013517 Sechium edule HOM05D006211 ORTHO05D007202 1.8e-10 70.1 168 32.1
BcaC02g11652 Brassica carinata HOM05D006211 ORTHO05D007202 2.4e-10 69.7 97 47.4
BolC4t22919H Brassica oleracea HOM05D006211 ORTHO05D007202 2.4e-10 69.7 97 47.4
Hund11197 Selenicereus undatus HOM05D006211 ORTHO05D007202 2.4e-10 69.7 95 42.1
BcaB02g09427 Brassica carinata HOM05D006211 ORTHO05D007202 3.1e-10 69.3 97 46.4
Thhalv10017330m.g Eutrema salsugineum HOM05D006211 ORTHO05D007202 3.1e-10 69.3 97 47.4
Lj2g0003916 Lotus japonicus HOM05D006211 ORTHO05D007202 3.1e-10 69.3 167 31.7
TPR.G8109 Trifolium pratense HOM05D006211 ORTHO05D007202 3.1e-10 69.3 165 30.3
Sp4g17690 Schrenkiella parvula HOM05D006211 ORTHO05D007202 4.0e-10 68.9 104 44.2
AL4G31520 Arabidopsis lyrata HOM05D006211 ORTHO05D007202 5.3e-10 68.6 103 43.7
FAN08G1932 Fragaria x ananassa HOM05D006211 ORTHO05D007202 9.0e-10 67.8 101 41.6
Migut.E00776 Erythranthe guttata HOM05D006211 ORTHO05D007202 1.2e-09 67.4 91 42.9
Eucgr.E00236 Eucalyptus grandis HOM05D006211 ORTHO05D007202 1.2e-09 67.4 75 46.7
FvH4_5g22880 Fragaria vesca HOM05D006211 ORTHO05D007202 1.2e-09 67.4 105 41.0
FAN04G1558 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.2e-09 67.4 171 34.5
FAN18G2302 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.2e-09 67.4 105 41.0
FAN18G0589 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.5e-09 67.0 105 41.0
Potri.001G138300 Populus trichocarpa HOM05D006211 ORTHO05D007202 1.5e-09 67.0 95 44.2
BcaB06g28843 Brassica carinata HOM05D006211 ORTHO05D007202 2.0e-09 66.6 99 42.4
Aa31LG9G15460 Aethionema arabicum HOM05D006211 ORTHO05D007202 2.6e-09 66.2 97 46.4
FAN13G1488 Fragaria x ananassa HOM05D006211 ORTHO05D007202 3.4e-09 65.9 173 37.6
A05p10260 Brassica napus HOM05D006211 ORTHO05D007202 4.5e-09 65.5 94 46.8
BraA05t19966Z Brassica rapa HOM05D006211 ORTHO05D007202 4.5e-09 65.5 94 46.8
THA.LOC104798487 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 4.5e-09 65.5 98 45.9
BcaC02g07713 Brassica carinata HOM05D006211 ORTHO05D007202 5.8e-09 65.1 99 43.4
BraA04t18191Z Brassica rapa HOM05D006211 ORTHO05D007202 5.8e-09 65.1 101 43.6
Sabra01G0107000 Salix brachista HOM05D006211 ORTHO05D007202 5.8e-09 65.1 95 44.2
Aqoxy3G02212 Aquilegia oxysepala HOM05D006211 ORTHO05D007202 1.0e-08 64.3 169 49.7
AT2G35470 Arabidopsis thaliana HOM05D006211 ORTHO05D007202 1.0e-08 64.3 105 42.9
CARHR129620 Cardamine hirsuta HOM05D006211 ORTHO05D007202 1.0e-08 64.3 98 42.9
Carub.0004s1716 Capsella rubella HOM05D006211 ORTHO05D007202 1.3e-08 63.9 105 41.9
BolC4t27918H Brassica oleracea HOM05D006211 ORTHO05D007202 1.7e-08 63.5 93 45.2
PSO782G5418 Papaver somniferum HOM05D006211 ORTHO05D007202 2.2e-08 63.2 102 47.1
Ca_25191_v3 Cicer arietinum L. HOM05D006211 ORTHO05D007202 2.9e-08 62.8 165 30.9
Psat2g138960 Pisum sativum HOM05D006211 ORTHO05D007202 4.9e-08 62.0 169 29.0
Glyma.01G015400 Glycine max HOM05D006211 ORTHO05D007202 6.5e-08 61.6 103 41.7
Actinidia17894 Actinidia chinensis HOM05D006211 ORTHO05D007202 1.1e-07 60.8 44 61.4
MSTRG.13745 Avicennia marina HOM05D006211 ORTHO05D007202 1.1e-07 60.8 38 68.4
HanXRQChr02g0049381 Helianthus annuus HOM05D006211 ORTHO05D007202 1.9e-07 60.1 160 31.9
Phvul.002G138000 Phaseolus vulgaris HOM05D006211 ORTHO05D007202 2.5e-07 59.7 103 40.8
Actinidia17897 Actinidia chinensis HOM05D006211 ORTHO05D007202 3.2e-07 59.3 58 46.6
Lalb_Chr16g0381161 Lupinus albus HOM05D006211 ORTHO05D007202 4.2e-07 58.9 169 32.0
Sed0017013 Sechium edule HOM05D006211 ORTHO05D007202 5.5e-07 58.5 95 42.1
THA.LOC104814422 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 5.5e-07 58.5 78 46.2
VMungo1215G0299 Vigna mungo HOM05D006211 ORTHO05D007202 9.3e-07 57.8 103 38.8
A04p26920 Brassica napus HOM05D006211 ORTHO05D007202 1.2e-06 57.4 41 63.4
C04p64310 Brassica napus HOM05D006211 ORTHO05D007202 1.2e-06 57.4 41 63.4
GSVIVG01013097001 Vitis vinifera HOM05D006211 ORTHO05D007202 1.2e-06 57.4 83 44.6
SGA_v2.0_scaffold20G09263 Striga asiatica HOM05D006211 ORTHO05D007202 1.6e-06 57.0 95 37.9
Glyma.09G207000 Glycine max HOM05D006211 ORTHO05D007202 6.0e-06 55.1 97 40.2
SGA_v2.0_scaffold6G03154 Striga asiatica HOM05D006211 ORTHO05D007202 6.0e-06 55.1 95 36.8


User provided reference genes

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