Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.5e-217 759.2 387 100.0
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 2.1e-142 509.6 377 68.7
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 5.7e-140 501.5 395 65.3
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 8.6e-136 487.6 381 64.8
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 2.5e-135 486.1 365 67.4
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 3.3e-135 485.7 387 64.9
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 1.2e-134 483.8 379 65.2
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 8.0e-134 481.1 386 64.8
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 1.5e-132 476.9 387 63.8
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 2.0e-132 476.5 388 62.6
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.0e-132 476.5 387 63.6
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 1.1e-130 470.7 307 75.2
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.4e-130 469.5 387 62.3
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 4.1e-130 468.8 384 63.5
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 2.0e-129 466.5 378 64.0
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 2.9e-128 462.6 307 73.3
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 8.6e-128 461.1 378 63.2
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 1.1e-127 460.7 366 64.2
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 1.5e-127 460.3 374 63.4
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 8.0e-126 454.5 391 61.4
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 1.8e-125 453.4 358 64.0
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 6.8e-125 451.4 385 60.3
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.0e-124 449.9 390 60.3
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 2.6e-124 449.5 373 62.2
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 3.4e-124 449.1 398 59.3
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 9.8e-124 447.6 378 61.9
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.1e-122 444.1 390 59.2
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 1.9e-122 443.4 389 59.9
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 4.1e-122 442.2 395 59.2
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 5.4e-122 441.8 369 62.1
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 9.2e-122 441.0 360 63.3
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 1.2e-121 440.7 315 67.3
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.6e-121 440.3 306 69.6
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 3.5e-121 439.1 324 65.7
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 4.6e-121 438.7 326 66.9
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 4.6e-121 438.7 378 61.1
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 4.6e-121 438.7 318 67.9
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 1.3e-120 437.2 383 59.3
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 1.3e-120 437.2 377 61.0
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 3.9e-120 435.6 381 61.2
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 5.0e-120 435.3 382 60.7
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 5.0e-120 435.3 312 68.3
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.5e-119 433.7 407 57.5
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 1.9e-119 433.3 381 59.3
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 3.3e-119 432.6 324 65.4
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 4.3e-119 432.2 369 59.3
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 4.3e-119 432.2 324 67.6
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 7.3e-119 431.4 376 59.6
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 7.3e-119 431.4 318 67.0
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 9.5e-119 431.0 388 59.5
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 1.6e-118 430.3 334 63.5
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 3.6e-118 429.1 329 63.8
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 4.7e-118 428.7 316 65.5
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 4.7e-118 428.7 337 64.1
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 2.3e-117 426.4 361 61.8
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.1e-117 426.0 424 55.0
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 4.0e-117 425.6 361 60.9
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 4.0e-117 425.6 361 60.9
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 4.0e-117 425.6 332 63.3
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 6.8e-117 424.9 359 59.1
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 6.8e-117 424.9 301 69.1
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 8.9e-117 424.5 380 58.9
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.2e-116 424.1 357 60.8
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.5e-116 423.7 316 66.1
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 2.0e-116 423.3 384 60.7
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 5.8e-116 421.8 383 56.9
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 5.8e-116 421.8 362 63.0
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 1.3e-115 420.6 383 56.9
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 2.2e-115 419.9 382 56.3
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 2.2e-115 419.9 319 65.2
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 3.7e-115 419.1 378 57.1
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 2.4e-114 416.4 319 64.6
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 3.5e-113 412.5 324 66.7
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 1.7e-112 410.2 301 67.1
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 1.7e-112 410.2 301 65.4
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 1.5e-111 407.1 435 52.4
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 9.5e-111 404.4 325 64.9
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 4.7e-110 402.1 387 53.5
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 1.4e-109 400.6 379 58.0
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 2.3e-109 399.8 289 66.8
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 1.5e-108 397.1 308 64.3
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 1.5e-108 397.1 302 62.6
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 7.5e-108 394.8 298 64.1
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 9.9e-108 394.4 382 56.0
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 1.3e-107 394.0 272 69.9
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 4.6e-105 385.6 331 58.3
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 8.6e-104 381.3 270 66.7
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 3.3e-103 379.4 353 56.9
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.2e-102 377.5 294 63.3
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 4.7e-102 375.6 310 61.3
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 1.8e-101 373.6 378 53.2
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 3.1e-101 372.9 310 58.1
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 9.9e-100 367.9 339 57.5
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 1.1e-98 364.4 225 77.8
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 2.3e-96 356.7 327 59.0
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 4.7e-94 349.0 310 55.2
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 1.9e-90 337.0 271 61.3
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 4.2e-90 335.9 520 41.2
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 3.0e-88 329.7 301 54.2
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 6.9e-85 318.5 329 53.2
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 2.0e-84 317.0 268 61.2
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 3.2e-82 309.7 309 48.5
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 1.3e-75 287.7 302 47.7
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 2.9e-75 286.6 303 48.2
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 2.7e-73 280.0 334 43.4
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 8.7e-64 248.4 187 66.8
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 1.9e-63 247.3 252 54.8
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 2.2e-62 243.8 181 65.7
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 4.8e-54 216.1 152 68.4
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.0e-52 210.7 202 54.0
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.8e-45 187.6 196 49.5
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.7e-43 181.0 134 63.4
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 3.2e-42 176.8 159 56.6
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 2.1e-41 174.1 129 63.6
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 2.8e-38 163.7 164 52.4
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 2.2e-35 154.1 164 50.6
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 1.5e-34 151.4 164 50.6
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 4.7e-33 146.4 112 66.1
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 2.4e-29 134.0 183 42.6
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 3.6e-25 120.2 191 35.6
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 8.8e-24 115.5 89 62.9
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 4.8e-22 109.8 126 48.4
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 7.0e-21 105.9 199 34.7
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 1.4e-08 65.1 99 42.4
MCO12G135 Micromonas commoda HOM05D002058 ORTHO05D003758 4.0e-08 63.5 117 31.6
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 5.2e-08 63.2 31 77.4
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 8.9e-08 62.4 58 51.7
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 8.9e-08 62.4 58 51.7
Peaxi162Scf00359g00118 Petunia axillaris HOM05D002058 ORTHO05D003758 6.4e-06 56.2 121 32.2
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 8.3e-06 55.8 202 22.8
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 8.3e-06 55.8 137 31.4


User provided reference genes

Program Settings