Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 2.2e-160 568.9 287 100.0
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 4.9e-72 275.4 263 53.6
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 4.9e-72 275.4 263 53.6
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 4.9e-72 275.4 263 53.6
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.1e-71 274.2 252 55.2
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 1.1e-71 274.2 263 54.0
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.2e-71 272.7 263 53.6
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 7.1e-71 271.6 263 53.2
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.2e-70 270.8 263 53.2
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 4.6e-70 268.9 268 53.0
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.0e-69 267.7 251 53.8
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 5.1e-69 265.4 251 53.8
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-68 263.1 269 49.8
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 4.3e-68 262.3 333 45.9
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.4e-68 261.5 248 53.2
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 3.7e-67 259.2 262 54.2
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.8e-66 256.9 262 52.3
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.5e-65 253.8 296 46.6
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.5e-65 252.3 254 53.1
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.5e-65 252.3 262 48.9
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-65 252.3 262 48.9
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-65 252.3 276 47.8
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-65 252.3 261 49.4
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.9e-65 251.9 259 52.9
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.9e-65 251.9 262 48.1
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 7.7e-65 251.5 264 51.1
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 7.7e-65 251.5 259 51.7
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.7e-65 251.5 262 48.5
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.7e-65 251.5 262 48.5
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.0e-64 251.1 266 50.0
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-64 250.8 262 48.5
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-64 250.8 262 48.5
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-64 250.4 262 48.5
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-64 249.2 262 48.5
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.5e-64 248.1 259 52.1
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 8.5e-64 248.1 260 50.4
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.4e-63 247.3 303 44.2
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-63 246.9 262 47.7
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 4.6e-62 242.3 264 51.9
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 6.1e-62 241.9 264 48.5
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 6.1e-62 241.9 263 49.4
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 6.1e-62 241.9 273 48.7
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.8e-61 240.4 233 53.2
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 3.9e-61 239.2 263 50.6
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.9e-61 239.2 262 49.2
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 6.7e-61 238.4 268 48.9
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 6.7e-61 238.4 264 50.4
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.8e-61 238.0 228 51.3
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.5e-60 236.5 265 49.1
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 4.3e-60 235.7 264 50.4
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 5.7e-60 235.3 260 48.8
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.7e-60 235.3 260 48.8
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 7.4e-60 235.0 266 47.7
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 7.4e-60 235.0 260 49.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.7e-59 233.8 260 48.5
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.8e-59 233.0 303 43.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.8e-59 233.0 260 48.5
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.8e-59 233.0 266 46.6
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 8.2e-59 231.5 265 49.1
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-58 231.1 260 48.1
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-58 231.1 260 48.1
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.3e-58 228.8 260 47.7
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 6.9e-58 228.4 264 47.3
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 9.1e-58 228.0 264 49.2
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 9.1e-58 228.0 282 44.0
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.5e-57 227.3 266 45.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 2.6e-57 226.5 265 46.0
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.0e-56 224.6 270 46.3
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.2e-56 223.4 250 48.0
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.4e-55 220.7 265 45.3
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 2.1e-54 216.9 264 46.6
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.1e-54 216.9 264 45.8
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 3.6e-54 216.1 255 43.9
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 6.1e-54 215.3 275 45.8
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.4e-53 214.2 273 47.3
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.1e-52 211.1 264 45.5
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.1e-52 211.1 263 46.4
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 2.6e-52 209.9 259 46.7
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.4e-52 209.1 249 45.8
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.3e-51 207.6 249 45.4
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.3e-51 207.6 249 45.4
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.3e-51 207.6 219 50.2
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.7e-51 207.2 250 47.6
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.8e-51 206.5 248 48.0
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.7e-51 206.1 268 43.3
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 3.7e-51 206.1 251 45.4
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.8e-51 205.7 280 44.6
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 6.3e-51 205.3 255 44.7
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.4e-50 204.1 268 43.3
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.4e-50 204.1 268 43.3
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 1.8e-50 203.8 258 46.5
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 1.8e-50 203.8 272 43.8
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 9.1e-50 201.4 277 43.0
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.5e-49 200.7 264 46.2
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 2.0e-49 200.3 262 43.9
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 7.7e-49 198.4 226 45.1
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.3e-48 197.6 267 43.4
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.7e-48 197.2 263 44.5
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.1e-47 194.5 257 44.0
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.4e-47 194.1 263 45.6
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 2.5e-47 193.4 203 50.7
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 5.5e-47 192.2 263 44.1
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 9.4e-47 191.4 179 54.2
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.6e-46 190.7 253 41.5
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.1e-46 190.3 257 42.8
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.1e-46 190.3 257 42.8
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.1e-46 190.3 274 41.6
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.1e-46 190.3 205 48.8
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 8.0e-46 188.3 273 40.7
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-44 184.5 242 42.6
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 3.7e-43 179.5 259 41.3
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 3.7e-43 179.5 259 41.3
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 4.8e-43 179.1 259 41.3
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.4e-42 176.8 170 55.3
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.3e-42 175.6 183 48.1
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.0e-42 175.3 183 48.6
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 7.0e-42 175.3 211 44.1
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-41 172.6 183 47.5
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 5.9e-41 172.2 262 39.3
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-40 171.0 260 38.8
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-40 170.2 161 52.2
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.0e-40 169.1 194 48.5
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 5.5e-39 165.6 260 37.7
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.6e-38 164.1 261 38.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.7e-38 162.5 160 53.1
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 6.1e-38 162.2 257 40.1
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-37 159.5 135 54.8
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 5.2e-37 159.1 188 46.3
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 6.8e-37 158.7 223 43.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.6e-36 156.8 176 48.3
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.0e-32 144.8 243 39.9
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 1.7e-32 144.1 210 41.0
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.9e-32 143.3 242 39.7
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.5e-31 141.0 257 37.0
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 8.0e-30 135.2 236 35.6
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.1e-26 123.2 130 53.8
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 4.2e-23 112.8 209 32.1
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 4.9e-19 99.4 199 31.7
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.1e-18 98.2 206 33.0
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.0e-18 95.5 88 52.3
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.0e-14 82.0 80 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 3.1e-13 80.1 147 35.4
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 4.0e-13 79.7 159 34.6
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 2.0e-12 77.4 89 46.1
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.0e-12 77.4 99 42.4
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 9.5e-07 58.5 66 45.5


User provided reference genes

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