Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 3.0e-42 174.9 95 100.0
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 8.2e-32 140.2 94 83.0
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 1.1e-31 139.8 94 79.8
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 2.4e-31 138.7 94 81.9
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 7.0e-31 137.1 94 81.9
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 9.1e-31 136.7 94 81.9
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 1.6e-30 136.0 94 80.9
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 4.5e-30 134.4 94 79.8
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 2.2e-29 132.1 94 75.5
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 5.0e-29 131.0 91 78.0
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.0e-29 131.0 91 78.0
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.0e-29 131.0 91 78.0
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.1e-28 129.8 91 76.9
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.1e-28 129.8 91 76.9
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.1e-28 129.8 91 76.9
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 9.4e-28 126.7 94 74.5
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 1.2e-27 126.3 88 73.9
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 2.1e-27 125.6 94 74.5
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.7e-27 125.2 88 75.0
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.6e-27 124.8 91 74.7
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 6.1e-27 124.0 91 74.7
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 1.8e-26 122.5 89 71.9
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 8.8e-26 120.2 93 73.1
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 8.8e-26 120.2 93 73.1
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.5e-25 119.4 88 70.5
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 1.5e-25 119.4 93 71.0
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 2.0e-25 119.0 93 71.0
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 2.6e-25 118.6 93 71.0
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 3.3e-25 118.2 87 71.3
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 7.5e-25 117.1 88 68.2
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 7.5e-25 117.1 93 68.8
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 9.7e-25 116.7 93 72.0
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 9.7e-25 116.7 88 71.6
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 9.7e-25 116.7 93 68.8
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 1.3e-24 116.3 90 68.9
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 1.7e-24 115.9 88 68.2
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 2.2e-24 115.5 88 67.0
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 3.7e-24 114.8 88 69.3
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 4.8e-24 114.4 87 71.3
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 4.8e-24 114.4 93 67.7
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 1.8e-23 112.5 88 68.2
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 2.4e-23 112.1 90 68.9
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 3.1e-23 111.7 88 67.0
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 5.3e-23 110.9 94 69.1
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 9.1e-23 110.2 85 67.1
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 1.2e-22 109.8 88 68.2
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 1.2e-22 109.8 88 63.6
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 1.2e-22 109.8 88 67.0
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 2.0e-22 109.0 86 64.0
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 2.0e-22 109.0 88 67.0
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 3.5e-22 108.2 97 67.0
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 5.9e-22 107.5 88 64.8
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 2.2e-21 105.5 87 65.5
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 2.2e-21 105.5 86 66.3
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 6.5e-21 104.0 88 60.2
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 1.5e-20 102.8 91 61.5
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 1.5e-20 102.8 87 60.9
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.5e-20 102.8 88 62.5
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 1.9e-20 102.4 87 63.2
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 4.2e-20 101.3 87 62.1
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 5.5e-20 100.9 61 75.4
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 5.5e-20 100.9 98 63.3
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 5.5e-20 100.9 88 60.2
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 1.6e-19 99.4 87 62.1
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 1.6e-19 99.4 93 65.6
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 1.6e-19 99.4 90 62.2
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 3.6e-19 98.2 92 59.8
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 4.7e-19 97.8 87 60.9
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 6.1e-19 97.4 87 60.9
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 6.1e-19 97.4 90 60.0
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 1.4e-18 96.3 85 62.4
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 1.8e-18 95.9 90 56.7
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 1.8e-18 95.9 90 56.7
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 1.8e-18 95.9 85 61.2
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 1.8e-18 95.9 85 61.2
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 2.3e-18 95.5 71 67.6
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 2.3e-18 95.5 122 49.2
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 4.0e-18 94.7 90 57.8
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 6.8e-18 94.0 87 57.5
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 8.8e-18 93.6 84 63.1
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 1.2e-17 93.2 87 58.6
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 1.5e-17 92.8 66 68.2
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 3.4e-17 91.7 90 56.7
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 4.4e-17 91.3 86 60.5
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 7.5e-17 90.5 56 75.0
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.3e-16 89.7 71 64.8
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 2.8e-16 88.6 94 55.3
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 3.7e-16 88.2 90 56.7
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 8.3e-16 87.0 94 54.3
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 1.4e-15 86.3 87 55.2
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 2.4e-15 85.5 78 61.5
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 3.1e-15 85.1 86 61.6
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 9.1e-15 83.6 119 44.5
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 4.5e-14 81.3 88 53.4
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 1.9e-12 75.9 50 74.0
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 7.2e-12 73.9 90 50.0
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.2e-11 73.2 87 51.7
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 3.6e-11 71.6 87 50.6
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 1.8e-10 69.3 40 75.0
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 2.2e-08 62.4 32 87.5
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 8.3e-08 60.5 37 73.0


User provided reference genes

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