Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 3.3e-192 676.0 455 100.0
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 2.0e-61 241.5 282 46.5
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 1.5e-59 235.3 307 45.6
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 1.5e-59 235.3 311 43.7
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 6.2e-58 229.9 310 42.9
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 8.9e-57 226.1 310 50.3
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 1.2e-56 225.7 307 41.0
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.8e-56 223.4 310 42.6
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 7.5e-56 223.0 267 46.1
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 1.7e-55 221.9 303 42.9
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 1.7e-55 221.9 289 41.9
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 2.9e-55 221.1 307 43.3
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 9.2e-54 216.1 282 47.5
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 6.0e-53 213.4 247 46.2
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 7.8e-53 213.0 271 49.8
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.7e-52 211.8 306 39.5
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 5.1e-52 210.3 280 50.0
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 2.5e-51 208.0 300 47.7
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.3e-51 207.6 306 40.5
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 1.2e-50 205.7 185 55.1
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 6.2e-50 203.4 285 40.4
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 2.2e-47 194.9 271 40.6
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 2.2e-47 194.9 225 52.9
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 2.9e-47 194.5 226 53.1
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 2.9e-47 194.5 222 45.9
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 6.4e-47 193.4 271 40.6
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 8.4e-47 193.0 222 45.5
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 1.4e-46 192.2 272 41.2
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 1.4e-46 192.2 283 39.9
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 1.9e-46 191.8 293 37.2
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 3.2e-46 191.0 227 45.4
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 3.2e-46 191.0 225 44.4
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 1.6e-45 188.7 290 45.9
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 4.6e-45 187.2 258 39.9
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 6.0e-45 186.8 291 44.3
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 1.3e-44 185.7 389 47.8
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 1.3e-44 185.7 271 39.1
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 3.0e-44 184.5 401 47.9
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 3.9e-44 184.1 279 39.1
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 1.5e-43 182.2 260 38.5
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 1.9e-43 181.8 186 47.8
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 1.6e-42 178.7 290 44.5
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 1.8e-41 175.3 225 41.8
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 6.8e-41 173.3 283 44.2
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 6.8e-41 173.3 283 44.2
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 1.7e-39 168.7 286 35.3
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 4.9e-39 167.2 227 42.3
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 1.4e-38 165.6 176 59.7
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 5.4e-38 163.7 251 44.6
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-37 162.5 180 47.8
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-37 162.5 180 47.8
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-37 162.5 180 47.8
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 4.6e-37 160.6 308 36.7
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.0e-37 160.2 180 47.2
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.0e-37 160.2 180 47.2
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 2.1e-34 151.8 226 39.4
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 2.8e-34 151.4 176 54.5
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 2.8e-34 151.4 265 37.0
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 2.8e-34 151.4 265 37.0
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 1.2e-32 146.0 175 41.1
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 4.2e-30 137.5 176 40.3
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 7.1e-30 136.7 151 58.9
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 2.7e-29 134.8 330 36.7
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 3.5e-29 134.4 299 29.8
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 1.4e-25 122.5 178 50.6
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.3e-25 120.6 178 38.2
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 2.0e-24 118.6 171 38.0
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 4.5e-24 117.5 162 37.0
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 1.3e-23 115.9 197 36.0
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 1.2e-21 109.4 255 30.6
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 3.3e-19 101.3 262 28.6
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 4.8e-18 97.4 195 30.8
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 2.5e-14 85.1 286 30.4
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 6.7e-12 77.0 171 26.3
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 8.7e-12 76.6 173 26.0
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 8.7e-12 76.6 174 26.4
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.1e-11 76.3 171 27.5
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 3.3e-11 74.7 173 25.4
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 3.3e-11 74.7 173 25.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 9.6e-11 73.2 190 26.3
SalBow6G6080 Salvia bowleyana HOM05D007893 ORTHO05D010042 1.6e-10 72.4 164 31.7
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 6.3e-10 70.5 156 26.3
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 5.3e-09 67.4 218 22.0
Gohir.A08G054000 Gossypium hirsutum HOM05D007893 ORTHO05D010042 9.0e-09 66.6 82 62.2
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 9.0e-09 66.6 169 29.0
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 1.2e-08 66.2 155 25.2
SGA_v2.0_scaffold141G35594 Striga asiatica HOM05D017480 ORTHO05D026194 2.6e-08 65.1 76 44.7
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 5.9e-08 63.9 170 25.3
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.0e-07 63.2 128 26.6
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 1.0e-07 63.2 161 21.7
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.3e-07 62.8 172 24.4
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 2.9e-07 61.6 174 23.0
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 2.9e-07 61.6 174 27.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.8e-07 61.2 174 24.7
SGA_v2.0_scaffold484G52360 Striga asiatica HOM05D017480 ORTHO05D026194 3.8e-07 61.2 52 55.8
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 5.0e-07 60.8 172 24.4
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.5e-07 60.5 133 28.6
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.5e-07 60.5 133 28.6
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 8.4e-07 60.1 165 26.1
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.1e-06 59.7 157 21.0
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 1.1e-06 59.7 166 25.9
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 1.9e-06 58.9 166 23.5
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 1.9e-06 58.9 192 24.0
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 2.5e-06 58.5 197 21.8
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 3.2e-06 58.2 165 24.8
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 3.2e-06 58.2 153 25.5
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.2e-06 58.2 171 23.4
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 4.2e-06 57.8 165 24.8
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 5.5e-06 57.4 147 25.9
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 5.5e-06 57.4 171 27.5
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.5e-06 57.4 162 25.9
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 7.2e-06 57.0 164 24.4
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 7.2e-06 57.0 132 25.0
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 9.3e-06 56.6 154 27.3
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 9.3e-06 56.6 144 23.6
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 9.3e-06 56.6 109 29.4
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 9.3e-06 56.6 151 27.8


User provided reference genes

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