Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 2.2e-104 382.9 287 100.0
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 4.0e-37 159.5 220 48.6
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 6.3e-35 152.1 213 50.2
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.1e-34 149.8 217 49.3
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 3.1e-34 149.8 220 48.6
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.0e-33 147.1 219 50.7
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 2.0e-33 147.1 219 47.0
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 3.6e-30 136.3 211 46.0
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 3.0e-29 133.3 219 47.9
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.5e-28 131.0 202 44.6
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 3.7e-27 126.3 205 43.9
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.3e-27 125.2 211 43.1
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.8e-26 124.0 205 42.9
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 7.0e-26 122.1 198 42.4
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.9e-25 119.0 212 42.5
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.3e-24 117.9 205 43.9
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 6.6e-24 115.5 198 46.5
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 6.6e-24 115.5 204 45.1
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 2.5e-23 113.6 201 43.3
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.1e-22 110.5 206 43.2
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 2.8e-22 110.2 203 42.4
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.8e-21 107.5 199 42.2
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.8e-21 107.5 200 43.5
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 4.0e-21 106.3 205 38.5
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.0e-21 106.3 200 43.0
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 3.4e-20 103.2 213 41.3
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 7.5e-20 102.1 221 39.8
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 9.8e-20 101.7 211 39.8
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.7e-19 100.9 215 40.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 2.8e-19 100.1 208 40.4
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.8e-19 100.1 199 41.7
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 3.7e-19 99.8 204 39.7
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 4.9e-19 99.4 211 41.2
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.4e-18 97.8 179 41.3
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.8e-18 97.4 205 40.0
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.2e-17 94.7 198 39.4
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.2e-17 94.7 213 38.5
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.2e-17 94.7 214 38.8
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 2.7e-17 93.6 212 39.2
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.7e-17 93.6 214 39.3
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.5e-17 93.2 111 47.7
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 7.8e-17 92.0 205 39.5
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.3e-16 91.3 207 39.6
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 2.3e-16 90.5 178 41.0
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 3.9e-16 89.7 203 40.4
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 6.6e-16 89.0 210 39.0
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 8.6e-16 88.6 206 35.9
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.1e-15 88.2 207 39.1
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 1.5e-15 87.8 201 36.3
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.9e-15 87.4 194 39.7
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.3e-15 86.7 210 40.0
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 4.3e-15 86.3 174 42.0
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 5.6e-15 85.9 83 51.8
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 7.3e-15 85.5 214 37.9
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.2e-14 84.7 217 38.2
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.2e-14 84.7 200 35.5
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 2.1e-14 84.0 194 39.7
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 2.1e-14 84.0 200 39.5
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.8e-14 83.6 199 37.7
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 1.8e-13 80.9 195 39.0
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 3.1e-13 80.1 201 38.8
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 3.1e-13 80.1 201 38.8
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 5.2e-13 79.3 202 37.1
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.5e-12 77.8 202 37.6
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.5e-12 77.8 196 38.3
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.5e-12 77.8 197 36.0
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 4.4e-12 76.3 211 34.6
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 4.4e-12 76.3 212 34.0
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 5.8e-12 75.9 199 33.7
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 9.8e-12 75.1 193 36.8
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 1.3e-11 74.7 202 34.2
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 2.9e-11 73.6 197 32.5
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 2.9e-11 73.6 201 35.3
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 2.9e-11 73.6 207 35.3
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 3.7e-11 73.2 202 34.7
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 3.7e-11 73.2 197 36.5
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 6.4e-11 72.4 199 34.2
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 8.3e-11 72.0 200 32.5
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 8.3e-11 72.0 208 33.7
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 1.4e-10 71.2 219 32.0
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.4e-10 71.2 203 36.0
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 2.4e-10 70.5 166 37.3
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 2.4e-10 70.5 204 34.8
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 5.4e-10 69.3 196 36.2
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 7.0e-10 68.9 200 34.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 7.0e-10 68.9 218 34.9
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 9.2e-10 68.6 203 32.0
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.2e-09 68.2 200 35.0
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 2.0e-09 67.4 202 34.7
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 2.7e-09 67.0 199 33.7
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.7e-09 67.0 168 35.1
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.7e-09 67.0 178 33.7
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 3.5e-09 66.6 198 35.4
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 3.5e-09 66.6 178 33.7
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 3.5e-09 66.6 208 35.1
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.0e-08 65.1 176 33.5
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.3e-08 64.7 221 31.2
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.7e-08 64.3 198 34.8
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 2.3e-08 63.9 207 33.3
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.9e-07 60.8 200 30.5
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 2.5e-07 60.5 191 33.5
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 3.3e-07 60.1 194 34.0
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.3e-07 60.1 178 32.6
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 4.3e-07 59.7 33 75.8
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 5.6e-07 59.3 196 32.1
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 9.5e-07 58.5 194 33.0
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.2e-06 58.2 194 33.5
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.2e-06 58.2 196 33.7
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 2.1e-06 57.4 193 32.1
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 2.1e-06 57.4 214 31.8
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 2.8e-06 57.0 204 31.4
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 8.0e-06 55.5 62 45.2


User provided reference genes

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