Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 6.8e-114 414.1 220 100.0
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 6.5e-72 274.6 196 72.4
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 1.4e-71 273.5 220 67.7
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.5e-71 272.7 226 66.8
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 5.5e-71 271.6 213 70.0
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 3.6e-70 268.9 197 72.6
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 3.0e-69 265.8 220 67.7
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 6.7e-69 264.6 198 71.2
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 3.3e-68 262.3 213 68.5
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 4.3e-68 261.9 207 68.6
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 9.7e-68 260.8 224 63.4
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 2.8e-67 259.2 219 66.2
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.8e-67 259.2 206 68.9
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.7e-67 258.8 197 72.1
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 3.7e-67 258.8 204 67.2
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 4.8e-67 258.5 197 70.1
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 8.2e-67 257.7 197 68.5
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 3.1e-66 255.8 197 70.6
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 2.6e-65 252.7 213 63.4
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 5.9e-65 251.5 205 65.4
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 7.7e-65 251.1 205 64.4
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 1.0e-64 250.8 203 66.0
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 1.3e-64 250.4 204 65.2
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 1.3e-64 250.4 196 67.9
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 1.7e-64 250.0 214 64.5
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.2e-64 249.6 209 65.1
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 2.2e-64 249.6 214 64.5
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 2.2e-64 249.6 214 64.5
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 2.2e-64 249.6 207 65.2
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 2.2e-64 249.6 199 68.8
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 2.9e-64 249.2 202 65.3
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 3.8e-64 248.8 201 66.2
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 5.0e-64 248.4 196 68.9
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 8.5e-64 247.7 206 64.6
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.1e-63 247.3 214 64.0
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.1e-63 247.3 203 66.0
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.4e-63 246.9 193 67.4
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 1.4e-63 246.9 202 64.9
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 1.4e-63 246.9 202 65.3
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 1.4e-63 246.9 210 63.3
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 1.4e-63 246.9 202 65.3
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 1.4e-63 246.9 210 63.3
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 1.4e-63 246.9 234 59.8
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.9e-63 246.5 193 66.3
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.9e-63 246.5 198 65.7
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 4.2e-63 245.4 203 64.5
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 4.2e-63 245.4 197 66.0
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 5.5e-63 245.0 203 64.5
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 5.5e-63 245.0 193 67.4
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 9.4e-63 244.2 198 67.7
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 9.4e-63 244.2 197 65.5
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 1.2e-62 243.8 202 64.9
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 1.2e-62 243.8 206 64.1
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 1.2e-62 243.8 191 67.0
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 1.6e-62 243.4 214 62.1
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.6e-62 243.4 205 62.9
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.6e-62 243.4 205 62.9
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 2.1e-62 243.0 204 61.8
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 2.1e-62 243.0 198 66.2
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.1e-62 243.0 197 65.5
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 2.7e-62 242.7 197 65.5
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.7e-62 242.7 199 65.3
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.6e-62 242.3 197 64.5
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 3.6e-62 242.3 225 63.1
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 3.6e-62 242.3 191 69.6
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 4.6e-62 241.9 199 64.8
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 4.6e-62 241.9 215 62.3
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 6.1e-62 241.5 197 66.0
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 7.9e-62 241.1 205 62.4
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 7.9e-62 241.1 199 63.8
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 1.0e-61 240.7 205 64.4
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 1.8e-61 240.0 205 62.4
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 1.8e-61 240.0 217 60.4
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 1.8e-61 240.0 189 66.1
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.3e-61 239.6 199 63.8
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.3e-61 239.6 199 63.8
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.3e-61 239.6 205 62.0
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.1e-61 238.4 197 64.0
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 1.5e-60 236.9 224 61.2
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 1.5e-60 236.9 221 60.6
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 2.0e-60 236.5 197 63.5
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 2.6e-60 236.1 224 61.2
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 2.6e-60 236.1 192 65.1
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 4.4e-60 235.3 192 65.1
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 7.4e-60 234.6 197 64.0
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 1.3e-59 233.8 206 61.7
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 1.7e-59 233.4 214 60.7
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 1.4e-58 230.3 190 64.2
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 3.1e-58 229.2 197 63.5
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 1.2e-57 227.3 213 59.6
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.6e-57 226.1 215 60.5
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 2.6e-57 226.1 186 62.9
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 7.7e-57 224.6 197 60.9
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 8.5e-56 221.1 197 62.9
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 1.4e-55 220.3 215 58.6
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 1.4e-55 220.3 198 58.6
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 5.2e-53 211.8 176 64.2
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 2.6e-52 209.5 190 61.1
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 4.4e-52 208.8 214 53.3
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.7e-51 206.8 160 69.4
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.7e-51 206.8 160 69.4
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 1.7e-51 206.8 138 74.6
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 1.2e-49 200.7 360 39.4
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 2.0e-49 199.9 157 65.6
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 3.8e-48 195.7 179 60.3
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 3.2e-47 192.6 140 72.9
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.1e-42 176.0 149 63.8
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 2.7e-41 172.9 153 58.2
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 8.5e-40 167.9 153 61.4
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 7.2e-39 164.9 182 53.8
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 2.0e-36 156.8 117 71.8
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.0e-33 146.7 108 75.0
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 3.5e-33 146.0 182 46.2
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.1e-31 141.0 194 42.3
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 1.2e-30 137.5 117 65.0
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 3.6e-30 136.0 162 49.4
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.8e-29 131.3 133 54.1
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 2.4e-26 123.2 120 55.0
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 2.7e-25 119.8 103 59.2
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 2.9e-24 116.3 196 36.2
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 3.6e-22 109.4 190 41.1
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 4.0e-21 105.9 74 75.7
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.0e-17 93.6 74 68.9
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 7.8e-17 91.7 79 57.0
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.0e-16 91.3 127 43.3
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 9.5e-15 84.7 60 75.0
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.6e-14 84.0 73 63.0
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 2.8e-14 83.2 198 31.3
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.3e-11 74.3 55 70.9
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 3.7e-11 72.8 56 69.6
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.5e-09 66.2 47 74.5


User provided reference genes

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