Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 2.8e-258 894.8 468 100.0
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.0e-159 565.8 469 64.4
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 3.3e-158 562.4 467 64.9
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 9.0e-156 554.3 461 63.6
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.9e-154 549.3 476 62.4
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 9.3e-153 544.3 453 65.6
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.2e-152 543.9 472 63.1
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 3.9e-151 538.9 471 60.9
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 6.7e-151 538.1 481 61.1
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 7.4e-150 534.6 471 60.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.1e-148 530.8 471 59.7
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.1e-148 530.8 472 61.7
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.1e-148 530.8 467 61.0
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.4e-148 530.4 468 59.2
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.0e-148 528.9 440 65.2
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 2.9e-146 522.7 463 61.8
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 6.5e-146 521.5 463 61.1
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 8.4e-146 521.2 473 58.8
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 3.2e-145 519.2 464 61.0
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 7.1e-145 518.1 469 59.5
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.7e-144 516.2 472 60.4
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 6.1e-144 515.0 469 59.3
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 6.1e-144 515.0 469 59.1
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.9e-143 512.3 473 58.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 8.7e-143 511.1 459 60.1
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.9e-142 510.0 465 59.6
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 5.7e-142 508.4 464 59.7
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 9.7e-142 507.7 471 59.0
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.3e-141 507.3 473 58.1
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.6e-141 506.9 469 57.6
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.2e-141 506.5 470 60.0
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.5e-139 500.4 469 57.8
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.4e-139 499.2 469 56.3
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.7e-139 498.0 467 56.7
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.3e-138 497.3 469 56.3
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-138 497.3 464 58.0
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.7e-138 496.9 467 59.7
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 3.8e-138 495.7 465 56.1
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.9e-137 493.4 463 56.8
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.9e-137 493.4 462 57.8
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.2e-137 492.7 470 57.4
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 3.2e-137 492.7 464 59.1
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 6.1e-136 488.4 467 56.5
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 5.1e-135 485.3 469 55.7
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 3.3e-134 482.6 469 55.7
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 9.7e-134 481.1 459 57.5
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.3e-133 480.7 466 56.9
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.7e-133 480.3 504 55.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.8e-132 476.9 377 65.8
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 5.3e-132 475.3 462 57.1
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.2e-131 474.2 474 57.6
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.5e-131 473.8 474 57.6
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 4.5e-131 472.2 470 54.7
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.9e-131 471.9 473 54.1
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 7.7e-131 471.5 466 54.5
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 7.7e-131 471.5 417 60.0
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.0e-130 471.1 469 54.8
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.9e-130 469.5 470 54.9
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 5.0e-130 468.8 469 55.0
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 5.0e-130 468.8 469 55.0
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-129 467.6 470 56.2
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.1e-129 467.6 470 55.7
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.7e-128 463.0 472 56.6
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 8.8e-127 458.0 466 56.4
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.1e-126 457.6 462 54.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.5e-126 457.2 451 55.7
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.6e-126 456.4 429 57.6
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 5.7e-126 455.3 475 54.7
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 7.4e-126 454.9 469 53.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.6e-123 446.4 369 63.7
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 5.9e-123 445.3 694 42.5
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 4.2e-121 439.1 434 55.8
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 9.4e-121 438.0 375 62.7
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 8.0e-120 434.9 470 55.1
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.1e-118 431.0 467 54.2
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.5e-118 430.6 463 53.1
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.5e-118 430.6 415 56.6
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.7e-117 427.2 534 49.4
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.8e-117 426.4 400 57.5
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.2e-114 416.8 549 45.4
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 3.2e-113 412.9 322 65.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 6.1e-112 408.7 430 53.3
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.8e-111 407.1 397 54.4
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 5.7e-110 402.1 393 57.0
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 5.7e-110 402.1 481 49.7
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.1e-105 387.9 387 57.1
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.5e-105 386.7 324 63.3
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.1e-104 383.6 291 65.6
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.1e-104 383.6 426 53.5
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 3.4e-102 376.3 483 45.5
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.3e-101 374.4 291 65.6
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 8.3e-101 371.7 515 47.6
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.1e-100 371.3 373 54.7
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.3e-98 363.6 491 46.2
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.3e-98 363.6 353 56.7
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 5.0e-98 362.5 417 52.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.0e-96 355.1 265 67.2
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 5.7e-94 349.0 469 47.5
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 3.2e-92 343.2 479 44.3
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 2.0e-91 340.5 274 62.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.5e-89 334.3 299 59.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 7.3e-89 332.0 359 51.5
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.7e-88 329.3 254 66.5
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.7e-85 319.7 339 52.8
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 7.0e-84 315.5 348 51.4
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 3.0e-82 310.1 383 47.8
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.8e-80 303.5 319 53.3
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 5.4e-76 289.3 446 41.7
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.6e-75 287.7 314 53.2
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.3e-74 284.6 229 63.3
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-73 281.6 242 60.3
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 6.8e-71 272.3 531 37.7
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 6.8e-63 245.7 169 72.8
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-60 236.9 308 46.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 6.0e-59 232.6 296 45.6
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.0e-47 193.4 159 61.6
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.9e-45 186.4 443 35.4
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 3.1e-39 167.2 177 54.8
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.3e-39 166.4 209 50.2
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.0e-37 162.2 547 30.9
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.1e-35 154.5 564 30.0
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 4.6e-35 153.3 105 66.7
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 8.7e-34 149.1 365 31.0
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.5e-30 138.3 156 51.3
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.9e-28 131.3 165 48.5
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.0e-22 111.3 65 86.2
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-22 111.3 158 43.7
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 3.0e-18 97.4 84 60.7
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.9e-18 97.1 127 46.5
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.3e-16 92.0 115 45.2
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.7e-16 91.7 121 40.5
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 4.8e-16 90.1 143 42.0
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.2e-14 85.5 109 48.6
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-13 82.0 72 56.9
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-13 82.0 72 56.9
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.9e-13 80.9 72 55.6
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-12 77.8 72 55.6
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 8.8e-10 69.3 81 48.1
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 2.0e-09 68.2 80 47.5
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.1e-07 62.4 54 61.1
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 4.1e-07 60.5 85 40.0
PGSC0003DMG400017506 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.9e-06 56.6 47 59.6


User provided reference genes

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