Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 7.3e-104 380.9 251 100.0
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.9e-35 153.7 267 48.3
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.5e-35 153.3 267 47.9
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.5e-35 153.3 264 46.2
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.2e-34 151.0 256 46.1
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.2e-34 151.0 253 41.1
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.6e-34 150.6 258 48.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.8e-33 147.1 257 45.5
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.3e-33 146.7 252 45.2
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-32 144.4 269 45.7
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 9.8e-32 141.4 253 43.9
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.1e-30 137.9 258 47.7
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.1e-30 136.0 270 44.4
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 5.4e-30 135.6 261 40.6
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 9.1e-30 134.8 261 41.4
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 7.7e-29 131.7 258 42.2
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.7e-28 130.6 260 45.8
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.9e-28 129.8 264 43.2
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.9e-28 129.8 275 35.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.8e-28 129.4 258 40.7
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.8e-28 129.4 258 40.7
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.8e-28 129.4 262 42.0
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 3.8e-28 129.4 263 41.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 5.0e-28 129.0 261 39.1
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.5e-27 126.7 256 44.5
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 2.5e-27 126.7 258 36.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.2e-27 126.3 252 38.9
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.2e-27 125.9 258 35.7
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 5.5e-27 125.6 259 42.5
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 5.5e-27 125.6 255 39.2
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 5.5e-27 125.6 255 40.8
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 7.2e-27 125.2 254 39.8
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.2e-27 125.2 258 38.0
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 9.4e-27 124.8 259 42.9
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.2e-26 124.4 272 41.9
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.6e-26 124.0 257 39.3
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.1e-26 123.6 258 35.3
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.1e-26 123.6 258 39.5
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 4.7e-26 122.5 256 39.5
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.7e-26 122.5 252 46.4
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 6.1e-26 122.1 252 40.5
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 6.1e-26 122.1 258 34.9
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.4e-25 120.9 253 39.1
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.8e-25 120.6 262 42.4
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 3.0e-25 119.8 264 37.1
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.0e-25 119.8 254 38.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 4.0e-25 119.4 260 38.5
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 5.2e-25 119.0 262 37.8
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 5.2e-25 119.0 262 37.8
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 8.8e-25 118.2 255 36.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.8e-25 118.2 138 52.9
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.8e-25 118.2 138 52.9
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.5e-24 117.5 253 38.7
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 2.0e-24 117.1 261 38.7
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.0e-24 117.1 263 40.3
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 2.0e-24 117.1 105 64.8
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.0e-24 117.1 123 69.1
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.4e-24 116.3 260 38.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.4e-24 115.9 105 60.0
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.7e-24 115.5 140 53.6
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 7.5e-24 115.2 270 38.1
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.8e-24 114.8 122 62.3
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-23 114.4 253 34.8
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-23 114.0 252 38.9
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.2e-23 113.6 253 36.4
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.2e-23 113.6 268 37.3
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.8e-23 113.2 251 35.1
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 3.7e-23 112.8 142 50.0
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.7e-23 112.8 253 38.7
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.7e-23 112.8 124 59.7
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 3.7e-23 112.8 268 35.8
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-22 111.3 253 41.1
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.8e-22 110.5 248 40.3
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 2.4e-22 110.2 105 61.0
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.4e-22 110.2 253 39.1
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 2.4e-22 110.2 263 36.1
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 2.4e-22 110.2 103 53.4
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.1e-22 109.4 265 43.4
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 4.1e-22 109.4 253 36.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 9.2e-22 108.2 103 61.2
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.2e-21 107.8 251 35.1
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.6e-21 107.5 252 35.3
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 2.7e-21 106.7 260 38.5
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.5e-21 105.9 253 39.9
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 7.7e-21 105.1 253 39.9
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.3e-20 104.4 264 38.6
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.3e-20 104.4 253 32.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.5e-19 100.9 259 37.5
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.5e-19 100.9 104 58.7
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 4.3e-19 99.4 105 59.0
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 4.3e-19 99.4 245 40.0
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.0e-17 94.7 257 32.7
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 3.0e-17 93.2 260 29.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.8e-17 92.0 235 34.0
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.7e-15 87.4 279 36.9
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.2e-15 87.0 114 48.2
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.9e-15 86.7 49 79.6
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 6.4e-15 85.5 260 32.7
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 5.4e-14 82.4 119 37.8
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.4e-14 82.4 123 38.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 7.0e-14 82.0 267 28.8
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.7e-13 80.1 259 38.6
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.5e-13 79.7 119 41.2
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 4.6e-13 79.3 133 44.4
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.0e-12 78.2 48 60.4
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.0e-12 76.6 247 28.3
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 3.0e-12 76.6 122 37.7
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.9e-12 76.3 125 38.4
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.6e-12 75.5 121 37.2
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.9e-11 73.9 259 29.7
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.5e-11 73.6 246 27.6
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.3e-11 73.2 253 34.4
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.3e-11 72.8 263 26.6
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.6e-10 70.9 103 45.6
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.7e-10 69.3 259 28.2
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 4.7e-10 69.3 47 59.6
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.2e-10 68.9 97 38.1
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.0e-09 68.2 114 42.1
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.8e-09 67.4 103 40.8
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.8e-09 67.4 103 40.8
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.8e-09 67.4 103 40.8
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.8e-09 67.4 90 40.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.8e-09 67.4 40 67.5
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.8e-09 67.4 112 42.0
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 2.3e-09 67.0 228 28.5
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 5.2e-09 65.9 250 34.0
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 5.2e-09 65.9 250 34.0
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 6.8e-09 65.5 83 42.2
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 8.9e-09 65.1 103 35.9
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 8.9e-09 65.1 103 35.9
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.2e-08 64.7 93 49.5
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.5e-08 64.3 159 34.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 2.0e-08 63.9 228 28.1
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.0e-08 63.9 103 35.9
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 2.0e-08 63.9 228 28.1
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.4e-08 62.8 262 34.4
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 5.8e-08 62.4 79 41.8
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 5.8e-08 62.4 79 41.8
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.9e-07 60.1 155 35.5
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.9e-07 60.1 77 39.0
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.9e-07 60.1 234 29.5
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.9e-07 60.1 87 44.8
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 6.4e-07 58.9 260 24.6
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 8.3e-07 58.5 97 34.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.9e-06 57.4 264 28.4
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.0e-06 55.5 175 29.7


User provided reference genes

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