Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 4.9e-63 244.2 114 100.0
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 4.4e-24 114.8 114 52.6
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 5.8e-24 114.4 110 52.7
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 4.9e-23 111.3 110 53.6
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 8.4e-23 110.5 110 52.7
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.5e-19 99.8 110 50.9
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.9e-19 99.4 110 50.9
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.6e-18 95.1 107 48.6
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 6.2e-18 94.4 104 48.1
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.3e-17 91.3 108 47.2
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.3e-17 91.3 108 47.2
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 6.9e-17 90.9 106 47.2
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.5e-16 89.7 110 50.9
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 2.0e-16 89.4 110 50.9
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 7.6e-16 87.4 112 42.0
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 1.3e-15 86.7 107 49.5
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 2.9e-15 85.5 109 42.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 8.4e-15 84.0 109 42.2
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 1.1e-14 83.6 115 47.0
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.9e-14 82.8 119 42.9
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.9e-14 82.8 119 43.7
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 4.2e-14 81.6 118 41.5
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 4.2e-14 81.6 110 44.5
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 5.4e-14 81.3 113 40.7
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 7.1e-14 80.9 80 52.5
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 7.1e-14 80.9 110 41.8
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 9.3e-14 80.5 118 41.5
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 9.3e-14 80.5 109 42.2
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 9.3e-14 80.5 108 43.5
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 2.1e-13 79.3 104 46.2
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 3.5e-13 78.6 113 42.5
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 3.5e-13 78.6 111 40.5
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 3.5e-13 78.6 113 38.1
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 6.0e-13 77.8 112 41.1
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.3e-12 75.9 110 42.7
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 3.0e-12 75.5 114 40.4
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 5.1e-12 74.7 111 37.8
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.1e-11 73.6 106 40.6
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.1e-11 73.6 115 42.6
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 2.5e-11 72.4 103 38.8
SGA_v2.0_scaffold198G41102 Striga asiatica HOM05D006292 ORTHO05D006110 5.6e-11 71.2 118 40.7
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 7.4e-11 70.9 122 39.3
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 9.6e-11 70.5 122 38.5
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 1.3e-10 70.1 118 40.7
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 1.3e-10 70.1 123 40.7
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-10 70.1 121 39.7
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.6e-10 69.7 106 44.3
Peaxi162Scf00615g00065 Petunia axillaris HOM05D034794 ORTHO05D006110 1.6e-10 69.7 110 40.0
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.6e-10 69.7 109 40.4
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 2.1e-10 69.3 110 42.7
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 2.1e-10 69.3 101 43.6
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 2.8e-10 68.9 108 37.0
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 2.8e-10 68.9 117 39.3
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.8e-10 68.9 121 39.7
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 3.6e-10 68.6 114 39.5
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 3.6e-10 68.6 126 38.9
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 3.6e-10 68.6 124 38.7
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 6.2e-10 67.8 110 36.4
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 6.2e-10 67.8 124 37.1
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 6.2e-10 67.8 124 37.1
MSTRG.12158 Avicennia marina HOM05D006292 ORTHO05D006110 8.1e-10 67.4 119 39.5
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 8.1e-10 67.4 105 41.0
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 8.1e-10 67.4 104 39.4
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 1.1e-09 67.0 107 40.2
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 1.4e-09 66.6 126 36.5
SGA_v2.0_scaffold6G03157 Striga asiatica HOM05D006292 ORTHO05D006110 1.4e-09 66.6 112 42.9
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.8e-09 66.2 119 38.7
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.8e-09 66.2 121 38.8
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.8e-09 66.2 107 42.1
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.8e-09 66.2 105 39.0
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.4e-09 65.9 106 38.7
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 3.1e-09 65.5 109 34.9
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 3.1e-09 65.5 109 34.9
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 4.0e-09 65.1 109 34.9
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 4.0e-09 65.1 124 36.3
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 4.0e-09 65.1 124 36.3
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 4.0e-09 65.1 109 34.9
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 4.0e-09 65.1 124 36.3
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 4.0e-09 65.1 109 34.9
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 4.0e-09 65.1 112 39.3
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 4.0e-09 65.1 108 43.5
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 4.0e-09 65.1 125 36.0
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 5.3e-09 64.7 109 37.6
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 5.3e-09 64.7 109 36.7
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 5.3e-09 64.7 124 36.3
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 1.2e-08 63.5 109 38.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.2e-08 63.5 108 38.9
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.2e-08 63.5 109 35.8
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.5e-08 63.2 109 36.7
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 1.5e-08 63.2 109 34.9
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 1.5e-08 63.2 109 35.8
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 1.5e-08 63.2 109 35.8
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.5e-08 63.2 110 43.6
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.5e-08 63.2 106 41.5
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.0e-08 62.8 115 37.4
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 2.0e-08 62.8 109 35.8
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 2.0e-08 62.8 105 37.1
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.4e-08 62.0 78 44.9
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.4e-08 62.0 78 44.9
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.4e-08 62.0 78 44.9
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 3.4e-08 62.0 102 38.2
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 4.5e-08 61.6 114 36.0
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 4.5e-08 61.6 114 36.0
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 5.8e-08 61.2 126 39.7
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 5.8e-08 61.2 107 41.1
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 9.9e-08 60.5 106 37.7
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.3e-07 60.1 106 39.6
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 1.7e-07 59.7 111 36.9
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 1.7e-07 59.7 105 41.9
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 2.2e-07 59.3 106 38.7
unitig_32.g10895 Utricularia gibba HOM05D006292 ORTHO05D006110 2.2e-07 59.3 108 38.9
Migut.A01008 Erythranthe guttata HOM05D006292 ORTHO05D006110 2.9e-07 58.9 94 40.4
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 3.8e-07 58.5 106 35.8
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 4.9e-07 58.2 108 35.2
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 4.9e-07 58.2 108 35.2
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 6.4e-07 57.8 108 33.3
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 6.4e-07 57.8 103 36.9
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 1.1e-06 57.0 108 34.3
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 1.1e-06 57.0 108 34.3
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 1.1e-06 57.0 108 34.3
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 1.9e-06 56.2 111 33.3
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 1.9e-06 56.2 106 37.7
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 2.4e-06 55.8 108 33.3
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 4.2e-06 55.1 121 33.1
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 4.2e-06 55.1 68 41.2
SalBow6G3663 Salvia bowleyana HOM05D006292 ORTHO05D006110 5.5e-06 54.7 67 46.3


User provided reference genes

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