Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 8.6e-84 313.5 151 100.0
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.8e-73 279.3 145 90.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 3.4e-72 275.0 134 97.0
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.9e-71 271.2 145 86.9
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 4.9e-71 271.2 145 87.6
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.1e-70 270.0 144 87.5
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.4e-70 269.6 145 87.6
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.9e-70 269.2 145 86.2
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.4e-70 268.9 145 87.6
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.4e-70 268.9 145 88.3
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.4e-70 267.7 145 86.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.4e-70 267.7 145 86.2
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.1e-70 267.3 145 86.9
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 7.1e-70 267.3 145 86.9
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.3e-70 266.9 145 86.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 9.3e-70 266.9 145 86.9
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.2e-69 266.5 144 86.1
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.2e-69 266.5 145 86.2
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.6e-69 266.2 144 87.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.6e-69 266.2 145 85.5
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.1e-69 265.8 144 86.1
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.5e-69 265.0 145 85.5
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 3.5e-69 265.0 145 84.8
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 4.6e-69 264.6 145 85.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 4.6e-69 264.6 145 84.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 6.0e-69 264.2 145 84.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 7.8e-69 263.8 145 85.5
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.0e-68 263.5 145 85.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.0e-68 263.5 145 84.8
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.3e-68 263.1 144 83.3
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.7e-68 262.7 145 85.5
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.7e-68 262.7 145 85.5
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.0e-68 261.9 143 83.9
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.0e-68 261.9 159 80.5
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 5.1e-68 261.2 144 84.0
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 5.1e-68 261.2 145 84.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.6e-68 260.8 146 84.9
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 8.7e-68 260.4 145 83.4
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 8.7e-68 260.4 145 84.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.1e-67 260.0 145 84.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.9e-67 259.2 143 83.2
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.9e-67 259.2 143 83.2
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.9e-67 259.2 143 82.5
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.9e-67 259.2 145 84.1
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.5e-67 258.8 146 84.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.5e-67 258.8 145 82.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.5e-67 258.8 145 84.8
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.3e-67 258.1 146 81.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 4.3e-67 258.1 145 82.8
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 4.3e-67 258.1 143 83.2
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 4.3e-67 258.1 145 83.4
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 4.3e-67 258.1 145 82.8
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 5.6e-67 257.7 143 82.5
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 5.6e-67 257.7 145 84.8
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 7.3e-67 257.3 145 84.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 9.6e-67 256.9 143 82.5
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 9.6e-67 256.9 145 84.1
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.3e-66 256.5 146 80.8
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.3e-66 256.5 143 82.5
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.3e-66 256.5 144 81.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.6e-66 256.1 145 82.1
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.6e-66 256.1 145 82.1
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-66 255.4 144 82.6
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-66 255.4 144 82.6
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.8e-66 255.4 141 85.8
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 4.8e-66 254.6 145 81.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.1e-65 253.4 143 79.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.4e-65 253.1 145 82.8
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.4e-65 253.1 145 81.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.8e-65 252.7 145 82.1
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.4e-65 252.3 143 81.1
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.4e-65 252.3 145 80.7
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.4e-65 252.3 145 80.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 3.1e-65 251.9 145 82.1
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.1e-65 251.9 145 82.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 3.1e-65 251.9 145 80.0
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 4.0e-65 251.5 145 80.7
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 6.9e-65 250.8 143 79.7
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 6.9e-65 250.8 143 80.4
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 6.9e-65 250.8 143 80.4
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.0e-64 249.2 146 78.8
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.6e-64 248.8 146 80.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 7.6e-64 247.3 145 80.0
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.7e-63 246.1 182 70.3
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.9e-63 245.4 134 86.6
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.8e-63 245.0 145 78.6
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.4e-62 243.0 144 79.2
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 3.2e-62 241.9 202 62.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.2e-62 241.9 144 79.9
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 3.2e-62 241.9 145 77.2
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 4.2e-62 241.5 144 81.2
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.2e-62 241.5 144 78.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 5.4e-62 241.1 145 78.6
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.1e-61 239.2 139 78.4
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 6.0e-61 237.7 147 76.9
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.8e-60 236.1 145 76.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 5.1e-60 234.6 146 76.7
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.7e-60 234.2 139 79.1
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.9e-59 232.6 158 72.2
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.5e-59 232.3 145 76.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.8e-58 228.8 146 74.7
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.3e-57 224.6 144 72.9
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.2e-54 215.3 144 67.4
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 9.3e-54 213.8 147 69.4
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 3.5e-53 211.8 141 70.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.0e-52 210.3 147 70.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.9e-52 208.4 147 66.0
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.1e-51 206.8 120 80.8
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.6e-50 203.0 126 78.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.8e-50 202.2 113 81.4
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.4e-49 199.9 116 82.8
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 3.1e-49 198.7 144 60.4
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.3e-49 198.0 144 63.2
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 4.5e-48 194.9 112 79.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.7e-47 193.0 146 59.6
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.9e-47 192.2 127 68.5
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 4.6e-45 184.9 141 56.7
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.9e-45 184.1 144 58.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 7.9e-45 184.1 99 87.9
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.1e-44 181.4 144 56.9
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 7.4e-43 177.6 137 65.7
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 4.1e-41 171.8 95 80.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.2e-39 166.0 144 56.2
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.9e-39 165.6 97 79.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.4e-38 163.3 146 50.7
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 5.0e-31 138.3 147 43.5
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.7e-21 105.9 72 63.9
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 9.7e-19 97.4 48 97.9
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.7e-16 87.8 75 58.7
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-14 84.0 48 79.2
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.4e-14 80.9 62 56.5
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.6e-13 80.1 47 76.6
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.7e-12 74.7 63 61.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 4.4e-11 72.0 47 70.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 5.3e-09 65.1 47 66.0
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 2.7e-08 62.8 108 38.9
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 4.2e-06 55.5 35 68.6


User provided reference genes

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