Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 3.9e-66 254.6 125 100.0
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 2.7e-46 188.7 123 75.6
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 1.7e-45 186.0 124 73.4
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 6.5e-45 184.1 123 74.0
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.1e-44 183.3 125 72.8
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.9e-44 182.6 125 72.0
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 5.5e-44 181.0 127 70.9
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 9.4e-44 180.3 123 73.2
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 2.1e-43 179.1 126 73.8
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 1.4e-42 176.4 123 73.2
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 1.4e-42 176.4 123 73.2
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 3.0e-42 175.3 126 71.4
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 4.0e-42 174.9 125 69.6
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 4.0e-42 174.9 123 72.4
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 5.2e-42 174.5 123 69.1
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 5.2e-42 174.5 130 68.5
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 8.8e-42 173.7 125 69.6
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 1.5e-41 172.9 125 68.8
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 9.8e-41 170.2 125 68.8
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 1.7e-40 169.5 130 66.2
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 2.8e-40 168.7 128 64.8
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 3.7e-40 168.3 128 66.4
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 4.8e-40 167.9 128 65.6
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 4.8e-40 167.9 128 65.6
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 1.1e-39 166.8 125 64.0
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.8e-39 166.0 128 64.8
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 3.1e-39 165.2 124 66.9
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.2e-38 163.3 128 64.1
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 1.6e-38 162.9 134 61.2
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 2.7e-38 162.2 125 68.0
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 2.7e-38 162.2 128 64.8
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 3.5e-38 161.8 133 63.9
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.5e-38 161.4 125 68.0
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 4.5e-38 161.4 126 65.9
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 7.7e-38 160.6 129 65.9
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 2.3e-37 159.1 130 66.2
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 5.0e-37 157.9 127 64.6
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 6.5e-37 157.5 121 66.9
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.1e-36 156.8 125 68.0
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 1.5e-36 156.4 130 61.5
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 1.5e-36 156.4 131 63.4
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 1.9e-36 156.0 126 61.9
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.9e-36 156.0 127 66.9
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.6e-35 152.9 127 62.2
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 4.7e-35 151.4 124 62.9
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 1.0e-34 150.2 127 59.8
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 1.0e-34 150.2 127 59.8
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 1.4e-34 149.8 134 60.4
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.4e-34 149.8 127 63.8
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 3.0e-34 148.7 128 64.1
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.0e-34 148.7 123 63.4
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 3.0e-34 148.7 123 63.4
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 6.8e-34 147.5 120 61.7
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.8e-34 147.5 123 62.6
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 2.0e-33 146.0 123 59.3
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 5.7e-33 144.4 133 55.6
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 9.8e-33 143.7 126 55.6
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.3e-32 143.3 129 56.6
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 3.7e-32 141.7 131 53.4
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 1.1e-31 140.2 129 55.0
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 1.1e-31 140.2 130 58.5
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 1.1e-31 140.2 128 56.2
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 1.8e-31 139.4 116 61.2
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 2.4e-31 139.0 133 52.6
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 7.0e-31 137.5 125 60.8
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 9.2e-31 137.1 133 51.9
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 1.2e-30 136.7 127 50.4
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 2.0e-30 136.0 128 54.7
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 3.5e-30 135.2 128 50.8
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 4.5e-30 134.8 124 54.0
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 1.3e-29 133.3 91 72.5
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 1.7e-29 132.9 128 53.1
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 1.7e-29 132.9 134 52.2
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 2.3e-29 132.5 130 53.8
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 5.0e-29 131.3 75 81.3
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 5.0e-29 131.3 129 52.7
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 8.6e-29 130.6 123 54.5
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.2e-27 126.7 134 50.7
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 1.4e-26 123.2 111 59.5
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 2.3e-26 122.5 135 48.1
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.3e-26 122.5 126 56.3
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 8.9e-26 120.6 125 52.8
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 2.6e-25 119.0 126 51.6
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 7.5e-25 117.5 100 60.0
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 7.5e-25 117.5 136 47.8
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 7.5e-25 117.5 127 50.4
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 1.3e-24 116.7 126 50.8
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 1.3e-24 116.7 126 50.8
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 1.3e-24 116.7 126 50.8
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 2.9e-24 115.5 126 50.0
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 3.7e-24 115.2 126 50.0
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 3.7e-24 115.2 126 50.0
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 3.7e-24 115.2 126 50.0
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 3.7e-24 115.2 126 50.0
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 3.7e-24 115.2 126 50.0
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 3.7e-24 115.2 126 48.4
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 4.1e-23 111.7 130 49.2
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 4.1e-23 111.7 126 46.0
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 4.1e-23 111.7 126 47.6
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 5.4e-23 111.3 126 47.6
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 5.4e-23 111.3 126 47.6
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 5.4e-23 111.3 124 50.8
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 1.6e-22 109.8 126 48.4
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 2.0e-22 109.4 130 48.5
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 4.6e-22 108.2 118 49.2
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 4.6e-22 108.2 92 59.8
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 1.0e-21 107.1 126 46.8
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 1.0e-21 107.1 126 46.8
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.0e-21 107.1 121 49.6
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 1.0e-21 107.1 137 43.8
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 6.6e-21 104.4 106 51.9
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 8.6e-21 104.0 92 57.6
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 2.8e-19 99.0 124 48.4
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 1.2e-17 93.6 135 41.5
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 2.0e-17 92.8 126 46.0
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 2.6e-17 92.4 114 50.0
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 7.5e-17 90.9 112 48.2
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 2.1e-14 82.8 122 38.5
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 1.0e-13 80.5 99 44.4
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 4.7e-11 71.6 126 42.1
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 1.2e-09 67.0 89 43.8
Sc18g0002820 Simmondsia chinensis HOM05D001618 ORTHO05D001486 4.6e-06 55.1 89 37.1


User provided reference genes

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