Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.1e-82 308.9 151 100.0
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 7.6e-48 194.1 151 63.6
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.5e-47 191.0 151 59.6
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 9.3e-46 187.2 153 60.8
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.8e-44 183.0 160 57.5
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.5e-43 179.9 154 56.5
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 5.7e-43 177.9 153 60.1
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 7.4e-43 177.6 154 58.4
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 7.4e-43 177.6 154 58.4
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 2.4e-41 172.6 163 54.6
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 4.1e-41 171.8 152 55.9
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 5.3e-41 171.4 151 57.6
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.3e-41 171.4 156 53.8
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 6.9e-41 171.0 163 50.3
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 6.9e-41 171.0 157 56.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 9.0e-41 170.6 163 50.3
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.5e-40 169.9 159 53.5
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.0e-40 169.5 163 49.7
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 3.4e-40 168.7 159 54.1
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 4.5e-40 168.3 157 56.1
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 7.6e-40 167.5 165 52.7
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.0e-39 167.2 151 54.3
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.3e-39 166.8 151 54.3
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.7e-39 166.4 164 53.0
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 2.2e-39 166.0 157 54.1
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 2.9e-39 165.6 159 54.7
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 5.0e-39 164.9 165 50.9
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 8.5e-39 164.1 153 54.2
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.1e-38 163.7 160 51.9
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.4e-38 163.3 158 54.4
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.4e-38 163.3 160 52.5
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.5e-38 162.5 163 53.4
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 3.2e-38 162.2 158 51.9
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.2e-38 162.2 160 51.2
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 3.2e-38 162.2 154 55.8
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 3.2e-38 162.2 158 53.8
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 5.5e-38 161.4 160 51.2
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 9.3e-38 160.6 151 51.0
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 9.3e-38 160.6 164 52.4
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 2.1e-37 159.5 165 50.9
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 6.1e-37 157.9 155 54.8
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 6.1e-37 157.9 154 53.2
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.0e-36 157.1 171 50.9
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.0e-36 157.1 156 53.2
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.3e-36 156.8 160 50.6
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.8e-36 156.4 155 51.0
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.7e-36 154.1 154 50.6
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.1e-35 153.7 168 48.8
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.1e-35 153.7 162 52.5
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.9e-35 152.9 152 52.0
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.5e-35 152.5 159 52.2
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.5e-35 152.5 163 54.0
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.3e-35 152.1 158 50.6
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 7.4e-35 151.0 162 48.8
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 9.7e-35 150.6 157 51.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.3e-34 150.2 158 50.6
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 2.2e-34 149.4 159 48.4
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.7e-34 148.7 158 50.0
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 3.7e-34 148.7 151 49.7
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 8.2e-34 147.5 158 50.0
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.4e-33 146.7 156 49.4
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.4e-33 146.7 153 49.7
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 2.4e-33 146.0 153 49.0
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 2.4e-33 146.0 197 42.1
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 3.1e-33 145.6 173 49.1
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.1e-33 145.2 159 49.1
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 9.1e-33 144.1 160 50.6
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.2e-32 143.7 142 52.8
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.2e-32 143.7 156 49.4
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.5e-32 143.3 153 48.4
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 2.0e-32 142.9 155 47.7
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 2.0e-32 142.9 155 47.7
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 3.4e-32 142.1 200 41.5
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 5.9e-32 141.4 157 47.1
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-31 139.8 151 47.0
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-31 139.8 151 47.0
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 2.9e-31 139.0 137 54.7
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 3.8e-31 138.7 164 48.2
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 6.5e-31 137.9 163 47.2
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 8.5e-31 137.5 151 46.4
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 8.5e-31 137.5 164 45.7
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.1e-30 137.1 244 35.2
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 3.2e-30 135.6 162 46.3
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 2.1e-29 132.9 131 51.9
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 2.1e-29 132.9 156 50.0
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.7e-29 132.5 163 44.8
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.6e-29 132.1 153 45.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 3.6e-29 132.1 158 45.6
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.6e-29 131.7 154 47.4
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.4e-28 130.2 156 43.6
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.4e-28 130.2 172 43.6
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.8e-28 129.8 162 43.2
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.8e-28 129.8 155 45.2
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 3.9e-28 128.6 156 42.9
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 3.9e-28 128.6 156 42.9
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 6.7e-28 127.9 154 45.5
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 6.7e-28 127.9 152 47.4
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 1.5e-27 126.7 157 42.7
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 2.6e-27 125.9 156 42.3
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.6e-27 125.9 159 43.4
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.4e-27 125.2 219 37.9
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.3e-26 123.6 156 41.7
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 2.8e-26 122.5 167 43.1
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 3.7e-26 122.1 162 42.0
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 3.7e-26 122.1 192 39.6
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 6.3e-26 121.3 169 40.2
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 8.2e-26 120.9 158 41.1
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.1e-25 120.6 193 39.4
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 1.8e-25 119.8 119 54.6
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 3.1e-25 119.0 167 40.7
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 3.1e-25 119.0 223 33.6
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 3.1e-25 119.0 267 31.8
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 9.1e-25 117.5 162 41.4
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.2e-24 117.1 161 41.6
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.0e-24 116.3 158 43.0
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.0e-23 114.0 125 44.0
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.7e-23 113.2 150 45.3
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 3.8e-23 112.1 106 51.9
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.2e-22 109.0 81 60.5
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 6.1e-21 104.8 170 40.0
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 7.9e-21 104.4 152 40.1
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.0e-20 104.0 148 40.5
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 5.2e-20 101.7 150 40.0
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 1.1e-19 100.5 81 56.8
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.7e-19 98.2 79 57.0
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 3.7e-18 95.5 157 37.6
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.8e-18 95.1 111 48.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 8.2e-18 94.4 113 46.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 4.1e-17 92.0 107 46.7
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 4.1e-17 92.0 156 36.5
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.3e-17 91.7 158 36.1
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 7.0e-17 91.3 156 36.5
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 7.0e-17 91.3 156 35.9
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.2e-16 90.5 146 38.4
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.0e-16 89.7 98 48.0
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.0e-16 89.7 155 34.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.0e-16 89.7 155 34.2
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 2.6e-16 89.4 153 35.9
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 7.7e-16 87.8 149 37.6
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 7.7e-16 87.8 98 45.9
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.3e-15 87.0 98 46.9
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-15 86.7 152 36.2
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 5.0e-15 85.1 152 35.5
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 5.0e-15 85.1 152 35.5
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 3.2e-14 82.4 88 53.4
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 5.5e-14 81.6 136 38.2
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.7e-13 79.3 88 45.5
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.7e-13 78.6 69 60.9
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 6.1e-13 78.2 73 52.1
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 3.0e-12 75.9 104 42.3
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.0e-12 75.9 80 50.0
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.0e-12 75.5 79 46.8
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 8.8e-12 74.3 96 43.8
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 3.3e-11 72.4 101 37.6
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 8.2e-10 67.8 78 44.9
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 7.0e-09 64.7 44 63.6
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 2.5e-06 56.2 86 40.7
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 9.4e-06 54.3 88 40.9


User provided reference genes

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