Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 6.7e-128 460.7 233 100.0
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 6.6e-83 311.2 211 73.9
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 7.3e-82 307.8 226 70.8
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 3.6e-81 305.4 229 69.9
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 6.2e-81 304.7 227 68.7
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 1.8e-80 303.1 234 69.2
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 4.0e-80 302.0 234 68.8
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 4.0e-80 302.0 218 69.7
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 4.0e-80 302.0 234 66.7
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 1.5e-79 300.1 241 65.6
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 4.4e-79 298.5 233 63.9
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 4.4e-79 298.5 233 65.2
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 1.7e-78 296.6 211 70.6
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 2.9e-78 295.8 222 65.3
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 2.9e-78 295.8 210 70.0
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 6.4e-78 294.7 224 67.9
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 2.4e-77 292.7 220 66.8
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 4.1e-77 292.0 210 67.1
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 5.4e-77 291.6 213 70.0
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 5.4e-77 291.6 238 61.8
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 9.2e-77 290.8 234 65.4
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 3.5e-76 288.9 222 63.1
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 6.0e-76 288.1 221 67.9
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 6.0e-76 288.1 231 65.4
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 7.8e-76 287.7 210 67.6
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 1.3e-75 287.0 216 68.5
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 1.3e-75 287.0 238 64.7
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 1.3e-75 287.0 220 65.0
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 3.0e-75 285.8 225 65.3
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 3.0e-75 285.8 225 64.9
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 5.1e-75 285.0 222 63.1
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 6.6e-75 284.6 215 67.4
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 6.6e-75 284.6 221 66.5
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 8.6e-75 284.3 210 64.3
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 1.1e-74 283.9 221 64.3
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 1.1e-74 283.9 221 65.6
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 1.1e-74 283.9 223 64.6
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 1.1e-74 283.9 230 63.9
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 1.5e-74 283.5 209 65.6
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 2.5e-74 282.7 234 63.7
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 5.6e-74 281.6 234 62.0
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 7.3e-74 281.2 221 65.2
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 1.2e-73 280.4 209 65.6
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 1.6e-73 280.0 210 68.6
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 1.6e-73 280.0 221 64.7
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 2.8e-73 279.3 210 68.6
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 3.6e-73 278.9 220 64.1
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 4.7e-73 278.5 222 62.6
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 4.7e-73 278.5 185 74.6
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 4.7e-73 278.5 222 61.3
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 6.2e-73 278.1 220 64.5
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 6.2e-73 278.1 224 64.3
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 6.2e-73 278.1 222 61.3
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.1e-72 277.3 222 65.3
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 1.4e-72 276.9 230 61.7
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 1.4e-72 276.9 216 67.1
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 4.0e-72 275.4 223 63.7
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 4.0e-72 275.4 210 66.7
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 5.2e-72 275.0 222 63.5
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 5.2e-72 275.0 219 65.3
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 1.5e-71 273.5 210 64.8
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 1.5e-71 273.5 219 64.8
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 2.6e-71 272.7 222 63.1
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 3.4e-71 272.3 222 64.4
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 5.8e-71 271.6 222 64.9
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.7e-70 270.0 231 61.9
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 1.7e-70 270.0 227 60.8
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.2e-70 269.6 222 62.6
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 2.9e-70 269.2 216 63.9
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 2.9e-70 269.2 226 62.8
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 3.8e-70 268.9 210 63.3
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 3.8e-70 268.9 233 59.2
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 1.1e-69 267.3 207 66.2
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 2.4e-69 266.2 233 61.8
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 7.8e-68 261.2 191 66.0
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 2.5e-66 256.1 234 56.8
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 2.5e-66 256.1 230 59.6
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 3.3e-66 255.8 221 59.7
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 4.3e-66 255.4 242 56.2
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 5.6e-66 255.0 218 59.2
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 9.6e-66 254.2 230 59.6
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 4.8e-65 251.9 218 57.3
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 6.2e-65 251.5 227 57.3
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 6.2e-65 251.5 242 55.8
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 1.4e-64 250.4 220 59.1
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 1.8e-64 250.0 226 57.5
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 4.0e-64 248.8 275 50.5
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 9.0e-64 247.7 221 59.7
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 1.2e-63 247.3 215 57.7
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 4.5e-63 245.4 224 58.0
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 7.6e-63 244.6 217 59.4
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 7.6e-63 244.6 217 59.4
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 7.6e-63 244.6 217 59.4
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 1.4e-61 240.4 226 56.6
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 3.2e-61 239.2 222 58.1
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 5.4e-61 238.4 213 60.1
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 1.6e-60 236.9 216 56.0
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 4.6e-60 235.3 213 56.3
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 1.8e-59 233.4 213 55.9
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 1.8e-59 233.4 213 55.9
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 5.6e-58 228.4 207 54.6
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 4.9e-54 215.3 144 72.2
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 5.5e-53 211.8 157 66.2
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 2.7e-52 209.5 139 74.1
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 1.1e-50 204.1 196 53.1
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 2.8e-49 199.5 143 68.5
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 5.3e-48 195.3 145 69.0
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 2.6e-47 193.0 145 65.5
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 1.8e-43 180.3 213 49.3
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 1.0e-35 154.5 118 63.6
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 6.7e-35 151.8 115 63.5
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 7.4e-26 121.7 189 38.6
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 7.0e-16 88.6 225 30.7
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 5.2e-11 72.4 118 35.6


User provided reference genes

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