Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 4.7e-40 167.5 92 100.0
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 3.6e-24 114.8 88 70.5
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 3.6e-24 114.8 88 70.5
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 1.2e-22 109.8 83 69.9
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 7.5e-22 107.1 84 65.5
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 9.8e-22 106.7 83 68.7
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 1.3e-21 106.3 75 74.7
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 2.2e-21 105.5 88 65.9
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 6.3e-21 104.0 81 70.4
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 8.3e-21 103.6 88 59.1
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 1.4e-20 102.8 86 61.6
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 2.4e-20 102.1 84 66.7
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 3.1e-20 101.7 74 68.9
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 3.1e-20 101.7 84 65.5
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 4.1e-20 101.3 76 69.7
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 5.4e-20 100.9 86 61.6
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 9.1e-20 100.1 76 68.4
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 9.1e-20 100.1 88 61.4
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 1.2e-19 99.8 88 60.2
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 1.2e-19 99.8 87 62.1
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 1.2e-19 99.8 78 67.9
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.6e-19 99.4 87 62.1
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 1.6e-19 99.4 86 60.5
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 2.0e-19 99.0 77 67.5
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 2.0e-19 99.0 87 60.9
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 2.0e-19 99.0 85 63.5
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 2.7e-19 98.6 84 59.5
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 3.5e-19 98.2 84 61.9
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 4.5e-19 97.8 85 60.0
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 4.5e-19 97.8 84 58.3
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 5.9e-19 97.4 87 59.8
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 5.9e-19 97.4 89 58.4
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 5.9e-19 97.4 87 60.9
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 7.7e-19 97.1 83 62.7
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 1.3e-18 96.3 75 66.7
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 1.3e-18 96.3 77 58.4
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 1.3e-18 96.3 74 64.9
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 1.3e-18 96.3 78 62.8
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 2.2e-18 95.5 68 70.6
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 2.2e-18 95.5 84 58.3
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 2.9e-18 95.1 83 59.0
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 2.9e-18 95.1 88 56.8
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 3.8e-18 94.7 85 57.6
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 3.8e-18 94.7 85 57.6
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 6.5e-18 94.0 76 64.5
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 6.5e-18 94.0 78 64.1
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 8.5e-18 93.6 85 56.5
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 1.1e-17 93.2 76 64.5
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 1.5e-17 92.8 75 66.7
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 2.5e-17 92.0 87 56.3
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 3.2e-17 91.7 75 65.3
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 3.2e-17 91.7 83 57.8
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 4.2e-17 91.3 66 71.2
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 4.2e-17 91.3 80 58.8
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 4.2e-17 91.3 74 66.2
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 5.5e-17 90.9 75 65.3
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 7.2e-17 90.5 83 59.0
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 7.2e-17 90.5 83 59.0
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 9.5e-17 90.1 88 53.4
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 1.6e-16 89.4 76 61.8
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 1.6e-16 89.4 75 64.0
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.1e-16 89.0 83 57.8
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 2.8e-16 88.6 86 58.1
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 2.8e-16 88.6 82 58.5
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 3.6e-16 88.2 76 61.8
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 3.6e-16 88.2 79 64.6
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 4.7e-16 87.8 88 52.3
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 4.7e-16 87.8 63 71.4
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 6.1e-16 87.4 68 61.8
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 8.0e-16 87.0 89 53.9
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 8.0e-16 87.0 69 69.6
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 1.4e-15 86.3 67 68.7
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 3.0e-15 85.1 64 73.4
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 4.0e-15 84.7 77 59.7
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 5.2e-15 84.3 74 58.1
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 6.8e-15 84.0 71 63.4
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 1.2e-14 83.2 85 51.8
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 1.5e-14 82.8 65 64.6
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 4.4e-14 81.3 79 58.2
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 3.7e-13 78.2 84 54.8
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 9.2e-12 73.6 88 50.0
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.2e-11 73.2 72 52.8
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 4.5e-11 71.2 59 61.0
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 7.8e-11 70.5 72 50.0
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 2.3e-10 68.9 66 54.5
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 2.3e-10 68.9 66 54.5
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 2.9e-10 68.6 66 54.5
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 3.8e-10 68.2 66 54.5
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 3.8e-10 68.2 86 45.3
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 3.8e-10 68.2 86 45.3
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 3.8e-10 68.2 72 51.4
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 3.8e-10 68.2 86 45.3
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 3.8e-10 68.2 86 45.3
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 5.0e-10 67.8 86 44.2
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.1e-09 66.6 66 54.5
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 1.1e-09 66.6 46 67.4
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 2.5e-09 65.5 86 43.0
PGR142G3578 Punica granatum HOM05D006869 ORTHO05D008641 4.3e-09 64.7 52 59.6
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 4.3e-09 64.7 44 72.7
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 5.6e-09 64.3 83 48.2
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 1.6e-08 62.8 71 50.7
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 3.6e-08 61.6 49 59.2
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 6.1e-08 60.8 43 69.8
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 5.2e-07 57.8 60 48.3
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 2.0e-06 55.8 61 49.2
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 7.5e-06 53.9 43 62.8


User provided reference genes

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